G1777247


Basic Information

Item Value
gene id G1777247
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 11935950 ~ 11938037 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2035162
CAAGCGGCAGAATTTCCAAACCTTGTATGCAAATGTAGTTTTTGTAAAGGTTGTTTTTTGGACTTGAAAGAGATGGAGAATTGTGCAGGCTGAATTGCCTTTTCACTATGTACACCCTCATAGACACTTTTACATCCACCTCTTTGGGGTTTTCTGAAGGCAAAAACTAGCACGGTATTTGCTGAGGACAACAAAAGGTCGCCCAAAACCTCATCTACTCAGGTTGTTATCTCGATTCAGAGAGAGGCTCTGCAACCCTATCACAGGACATTTACCTCCCATTTTACCTCAAATGAGTTCTCAGAAGTTGTTTTGGCTTGTCAAGCTAAGAACTTCTCAGAACTCTGGGCCCTCCACAAATAACTCAATTTTTTTGTTCCAACTTAGTTCAGTATAAAGCAcatcaaatttttttttttaggaaaaaGGACAACCGCGTGAAAAGTAATCCACCATCAGatctaaaaaaaataaagtttaatGTTCGTGTATCACAAAGTAAATATATTAGTGTTTACAAAACAATTGGGTGCATGACAATAATGCATAACctaattacgtttttttttttttttttaccaacaaCAACAGTGATAAGAACGCCTTCTATCGACAACAAACACGGTTTCATCCCACAGTTATAAATGTATAATTCTACTGTATAAATGCAAAAGCCGTTACAAGTTCAACAGAGTGTGAGAGCAAAGGTAGGTGTTGCAGAGGAACAGGAACTCACAGGGAGCTACGGTGGTTCAGATAACCTGATCTGTTTCTCTTGGAGCAGACTTGTGACTTGCCTTACCTTATTTAGAGATCGCTCTTTTGAATACAGATACAGTCAGGTACAGAATTAGGTAAACATTTCGGAATAAATCATACTGCCAAAATATTTCCATGACGTAGGGGGAATCTATTGAGACATTCGAATTACTTAACAATATGGTTTTCAAAATGAGGGTGAATGTAGACGTCCCATAGGCCATTAAATAGCAATCCCCACTTAGGTAAATGAACAAAGATTTGCATGCTAAAAATGATTTGTGTTCTGAACAAAAATGCATCCATCTAATAgattgtaaaaatgtatattttatccTCACATTTTGGTTGTTCACTAAATATAAAAattcacgttttttttttttattctatgGTGTTGCAATGATCAACCCGACAGTTGTTCAGGGTTTATCCTAGTTATTGTGTAAGTGTCAGCATGCGTTGGATAGCCTCCCCTGACCAAAAGCTAACCACACCTTTGTAGGCATTGTCGTCGAATGCTGTGCTCTAAAAACATTAAACACATTTAGTGGTAAATCATACAATTTCAATTTTTAGTGAATTGTCCCTTGAACTATTGCATGAGAATAGAGAACACAATCGATCAGTGTAATTGAAAGAAGAGGTAATCATTTTAAACATCAATACAATTAGTGAGACAGCTGAACTGGTACGTGACTAAACTATAAATTTGAGAGGGAAACCTGACAAATGACATCATATGATGGTGGCTCTAAAATTGCCTGATCTAAAGTCACATTAATAGAGGGACCCCAGAAATGCATATCATTGACTACATTACTCAAATGTTGCTATACAAACATGTACAGCACATCATTCACGGGAGACAATCAGAAATGTGAAAAATACTTTGATGGAAAATCTGAAAACATGACGATGCATTTTACAATCAAACAATAGTGCATATCTGTTTCAGGTCATCTTGAGGATGGGTGTTACCTAGGACTATGGCTAACGCTAGTCAACAAGAAATTAAACAACTGTACAGTGAACAAGATCCCCAAAACTGGGACAACTAGACATTTGCACTGGGTTCCTCAACAACAGCTAGTTGGTATTGCTCTACTAAACACACAATTGGTACTGTACGAATCAAAGTGCGATGGTAAACCCTGCTTTCAAATTCAGTTATTACTGGTTTATGGTTCACACCATTTTAAATTCCCTCCATTTGGTAAAATCGAGAAGGTCAACGTCTACATTTGAAAATACTTGTGCTTATTATTGATGGCTATAATACCCAGCCAACGTTATCACATTAAGTTGTCGtcccatatacagtgcatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2035162 True 2088 lncRNA 0.37 1 11935950 11938037

Neighbor

gene id symbol gene type direction distance location
nemp2 LOC106581926 coding downstream 61877 11863505 ~ 11874073 (-)
fkbp7 fkbp7 coding downstream 91654 11839576 ~ 11844296 (-)
LOC110501383 LOC106581884 coding downstream 116739 11816250 ~ 11819211 (-)
tns1b LOC100286503 coding downstream 144381 11486908 ~ 11791569 (-)
igfbp5 igfbp5 coding downstream 881358 11039501 ~ 11054592 (-)
ofd1 ofd1 coding upstream 75630 12013667 ~ 12025374 (-)
LOC110501393 LOC106581920 coding upstream 93045 12031082 ~ 12034892 (-)
egfl6 egfl6 coding upstream 99793 12037830 ~ 12059560 (-)
LOC118936315 NA coding upstream 166027 12104064 ~ 12105954 (-)
LOC110501396 LOC106581917 coding upstream 166027 12104064 ~ 12112735 (-)
G1777220 NA non-coding downstream 41326 11894328 ~ 11894624 (-)
G1777152 NA non-coding downstream 156236 11779496 ~ 11779714 (-)
G1777147 NA non-coding downstream 159135 11776376 ~ 11776815 (-)
G1777119 NA non-coding downstream 193105 11742579 ~ 11742845 (-)
G1777118 NA non-coding downstream 193645 11741851 ~ 11742305 (-)
G1777250 NA non-coding upstream 6775 11944812 ~ 11945033 (-)
G1777259 NA non-coding upstream 21128 11959165 ~ 11959371 (-)
G1777285 NA non-coding upstream 98267 12036304 ~ 12036629 (-)
G1777287 NA non-coding upstream 103699 12041736 ~ 12042023 (-)
G1777292 NA non-coding upstream 109805 12047842 ~ 12048077 (-)
G1777196 LOC100136012 other downstream 92891 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2198094 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 2643975 9289279 ~ 9291975 (-)
G1774133 NA other downstream 2812701 9101752 ~ 9123249 (-)
gpr161a gpr161 other downstream 2872749 9044945 ~ 9063520 (-)
G1777286 NA other upstream 103071 12041108 ~ 12041622 (-)
G1777441 LOC106581914 other upstream 330180 12268217 ~ 12270114 (-)
LOC110501411 LOC106581904 other upstream 682545 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 1230743 13168780 ~ 13172979 (-)
G1778224 NA other upstream 1341243 13279280 ~ 13330495 (-)

Expression


Co-expression Network