G1777441 (LOC106581914)


Basic Information

Item Value
gene id G1777441
gene name LOC106581914
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 12268217 ~ 12270114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2035374
TCCACCAAGATACAAATAACACAAAGACACTTGCAGCATCAAACATAATTGGATGTCATGTTTCACTAAGaaagttgtattttattttggTTATAAAATATCTGCATTATATCTCACAAGGTGATAttacaatataaatataaacaTTACATGTAGGCTATTAGTACCAATACGTTTAGGATACATTCAGATTCATTCTCACACCATTGTTCtgagttgaaataaaaaaattaaacataAAGGAAAGAAAATTAAGTATTCAGTTACTATGGGTAAACAATATTCAGATAGTCACATGTCAGTGATGCTAATTTGCGTCTCTGTTGGGGTACTGTCTTAGTGGCAAAGTGTTGGAGTCAGACTTCTGAAATATGAAAACTGTAAGACACACATCAAGAGCGAAATGACAACATTCACTCACAGACAATTGGCACAACTCAGTAAGTTTAACCTACAATTTAGAGAAGGACGAAGTAGTTAGAGCGAGTGCGTATAAACATCACATCTACTCTCTGGTAGAGTGTATTGTCTGCTGACAGGGCAGCTCCTATCTGCCACCTTTCCTTCTGCAACTCTGGGCTGCCTGACACCTTCCCTTCCAGAGGACCAGAGGAGGGGGCCGTAGGGGCCACAGTCTAGGGCCCAGGGCTGCTGtagccctggggggggggggcagttatgGATTCTGTTTGGGTCACACACCCAGGTTAGTGCGTGGAAAGTTAGAGGGAAGGTGTGGAGAAGTTCCTCTGAGCGTTCCAGAGTAGGAAGGGGGATGCCTTCCATCCACCCTGCCGCCAGACCTGCCTCTGAGGGAGGGACTGGCAGGCTGTCCCATTCCACCCATTAGCGCAATTTCTTCTGGGCTGCAGCCCCCTGGTTGGCCCGGTGGTCAGTGACGTAATAACAGGTCTGTATCCTCCAATCTCTGCCCTCTCTTCGTCAGAGGGCTACTGCTGCAGCAAGTCACTGGGGGATGTGGCCTGCACTCAGGCATACCAATTGAGGTGTAAGTTCATCTGACACGCTGTTTGCTGTTGTTACCTTGGTGACCGTCGAGTCCCTCCAATGAGCCACAAGAGCTGCATTCTGAAACGTCGCCATGGGAAACTGGGGGAAACCATTTACACATAATCAAAGTCTTATCTCCACCTAGTGAACATGTAATTTATTCTATGCGGCAGAGTTTCAAAGAACAAAGAATGAGACATGCTATTCAAAGACAATGAACGTACCAGTGATATGATGATCCATAAACCTTTTCCTTAGAGAGGAATGCCAGACACCCCAGAAATGTTAATCAGGTGTGTCTAATAGAAAAATCCGAAATATTCTTCATATTAAGCAGCAATATACAATACAGTGTATTAGTGCTATTTTCAGAGATGAAATGGCCAACAACTTGATCATTGGGtcagaggggttgggttaaatgtcggaagacacatttcagctgaatgcattcagttgtacaactgactaggtatattCCCCTTTCCCTTTGCCTGTGGATGGTGAGTGGTACTGTAGCTGTCGCTGGGACAACCTTTGACGTGGCCCACCAGTTTCTACTGCTCGGGGACCTTGACGAGCTTGTCAGAGAGGGGGCTGCTGTCTCCCTGGTCTTGGGAGAGCAAGAGCTCCGACAGCACTGGAGAGTTCATTTCATAGGGGGACACATCCGCACTGGAGGCCTTGTTGGAGTCACTGGAGCAGCGCCTCTCACTCAGAGAGAAGGGATCTTCAATCATCTGCAGGCCTGGACCACTattggaaagaggagagagacattatgAAGAAGAATCTGCACCCTAGTTACAAAGTATGCCATAATGTACAGATAAGGGGGGAACATTTGTAGTTCCACATAAAGCAAGT

Function

NR:

description
rho GTPase-activating protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2035374 True 1878 TUCP 0.46 2 12268217 12270114

Neighbor

gene id symbol gene type direction distance location
LOC110501397 LOC106581916 coding downstream 78815 12125451 ~ 12189402 (-)
LOC110501396 LOC106581917 coding downstream 155482 12104064 ~ 12112735 (-)
LOC118936315 NA coding downstream 162263 12104064 ~ 12105954 (-)
egfl6 egfl6 coding downstream 208657 12037830 ~ 12059560 (-)
LOC110501393 LOC106581920 coding downstream 233325 12031082 ~ 12034892 (-)
LOC110501402 NA coding upstream 17715 12287829 ~ 12296285 (-)
LOC118943634 LOC106581874 coding upstream 99060 12369174 ~ 12375707 (-)
cnmd LOC106581911 coding upstream 151732 12421846 ~ 12426247 (-)
LOC110501405 LOC106581910 coding upstream 157456 12427570 ~ 12432961 (-)
LOC110501410 LOC106581903 coding upstream 337195 12607309 ~ 12620201 (-)
G1777440 NA non-coding downstream 321 12267517 ~ 12267896 (-)
G1777387 NA non-coding downstream 61974 12203892 ~ 12206243 (-)
G1777341 NA non-coding downstream 125952 12138888 ~ 12142265 (-)
G1777260 NA non-coding downstream 162299 12104049 ~ 12105918 (-)
G1777306 NA non-coding downstream 195853 12072028 ~ 12072364 (-)
G1777484 LOC106581913 non-coding upstream 74017 12344131 ~ 12345514 (-)
G1777548 NA non-coding upstream 179003 12449117 ~ 12449737 (-)
LOC110501413 LOC106581899 non-coding upstream 414393 12684208 ~ 12716652 (-)
G1777721 NA non-coding upstream 440581 12710695 ~ 12711897 (-)
G1777741 NA non-coding upstream 482418 12752532 ~ 12760661 (-)
G1777286 NA other downstream 226595 12041108 ~ 12041622 (-)
G1777196 LOC100136012 other downstream 425158 11841073 ~ 11843059 (-)
fundc1 fundc1 other downstream 2530361 9635535 ~ 9737896 (-)
rpl8 LOC106586796 other downstream 2976242 9289279 ~ 9291975 (-)
G1774133 NA other downstream 3144968 9101752 ~ 9123249 (-)
LOC110501411 LOC106581904 other upstream 350468 12620582 ~ 12624860 (-)
G1778140 efnb2 other upstream 898666 13168780 ~ 13172979 (-)
G1778224 NA other upstream 1009166 13279280 ~ 13330495 (-)
G1781137 lrp2 other upstream 3297389 15567503 ~ 15568534 (-)
b3galt1b LOC106581793 other upstream 3415742 15684423 ~ 15825221 (-)

Expression


Co-expression Network