Gene
RNA
| Item | Value |
|---|---|
| gene id | G1777484 |
| gene name | LOC106581913 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 12344131 ~ 12345514 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase Midline-1 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2035420 | False | 675 | lncRNA | 0.48 | 3 | 12344131 | 12345514 |
| TU2035419 | True | 446 | lncRNA | 0.51 | 2 | 12344958 | 12345514 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501402 | NA | coding | downstream | 47846 | 12287829 ~ 12296285 (-) |
| LOC110501397 | LOC106581916 | coding | downstream | 154729 | 12125451 ~ 12189402 (-) |
| LOC110501396 | LOC106581917 | coding | downstream | 231396 | 12104064 ~ 12112735 (-) |
| LOC118936315 | NA | coding | downstream | 238177 | 12104064 ~ 12105954 (-) |
| egfl6 | egfl6 | coding | downstream | 284571 | 12037830 ~ 12059560 (-) |
| LOC118943634 | LOC106581874 | coding | upstream | 23660 | 12369174 ~ 12375707 (-) |
| cnmd | LOC106581911 | coding | upstream | 76332 | 12421846 ~ 12426247 (-) |
| LOC110501405 | LOC106581910 | coding | upstream | 82056 | 12427570 ~ 12432961 (-) |
| LOC110501410 | LOC106581903 | coding | upstream | 261795 | 12607309 ~ 12620201 (-) |
| LOC110501411 | LOC106581904 | coding | upstream | 275068 | 12620582 ~ 12624860 (-) |
| G1777433 | NA | non-coding | downstream | 67781 | 12257304 ~ 12276350 (-) |
| G1777440 | NA | non-coding | downstream | 76235 | 12267517 ~ 12267896 (-) |
| G1777387 | NA | non-coding | downstream | 137888 | 12203892 ~ 12206243 (-) |
| G1777341 | NA | non-coding | downstream | 201866 | 12138888 ~ 12142265 (-) |
| G1777260 | NA | non-coding | downstream | 238213 | 12104049 ~ 12105918 (-) |
| G1777548 | NA | non-coding | upstream | 103603 | 12449117 ~ 12449737 (-) |
| LOC110501413 | LOC106581899 | non-coding | upstream | 338993 | 12684208 ~ 12716652 (-) |
| G1777721 | NA | non-coding | upstream | 365181 | 12710695 ~ 12711897 (-) |
| G1777741 | NA | non-coding | upstream | 407018 | 12752532 ~ 12760661 (-) |
| G1777743 | NA | non-coding | upstream | 408072 | 12753586 ~ 12761087 (-) |
| G1777441 | LOC106581914 | other | downstream | 74017 | 12268217 ~ 12270114 (-) |
| G1777286 | NA | other | downstream | 302509 | 12041108 ~ 12041622 (-) |
| G1777196 | LOC100136012 | other | downstream | 501072 | 11841073 ~ 11843059 (-) |
| fundc1 | fundc1 | other | downstream | 2606275 | 9635535 ~ 9737896 (-) |
| rpl8 | LOC106586796 | other | downstream | 3052156 | 9289279 ~ 9291975 (-) |
| G1778140 | efnb2 | other | upstream | 823266 | 13168780 ~ 13172979 (-) |
| G1778224 | NA | other | upstream | 933766 | 13279280 ~ 13330495 (-) |
| G1781137 | lrp2 | other | upstream | 3221989 | 15567503 ~ 15568534 (-) |
| b3galt1b | LOC106581793 | other | upstream | 3340342 | 15684423 ~ 15825221 (-) |
