G1806539 (LOC106582346)


Basic Information

Item Value
gene id G1806539
gene name LOC106582346
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37218976 ~ 37221865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2066831
TATTTGATAAAAAAGTTCATTTTAACTAGGTAGTTCtcattttacatcaatttcccaTAAAACATATTTATCTTTCTTCTTGATAAATTAAAAAGTTGTATTAGTCATGCAGTTTCGCATTTCCCTTTTGAATTTTATCTTTCCCAAAAATAACAAGAACACAATCTTATTGAACTCCAACGAAGCCGCTAAGTAGCCGAGGGAGGAAAAGCATCAACATGCAGCACTGTACACATTTGCATAGtacatttctctttttctctaGATTAGTTTGTCCAATTGTTTTTCTCTTTACCAGCATGCCTTTATAGAACACAGCACTAACAGAAATCAAGCTATCTTGGCAACAGAAGAAGGTATTCGaagaaaacaaataaaatatgtTGTGATTTGTTTGGTTGGGGGTTTCTGATACATACCCTCTATTGGTGATCTATGCATAACTGGTAGCATACAGAGAGACATTCTCTGACATGAACCTCTATACAGAACTCCCTAGTCTGTAcccttcacactctcttcatATGACTAAACCTCTATAATTGTTCCTAACCATTTAGACCATAAAAACTGTGAAATAAAATGCTACATTTTGAGGATATGTATATGGATAGGAGAGAAGCCCCTCCATTGCTACAGTACCCCCCAAAAAAGTTTAAAACAAGGCCTGGGTTAAGCAATAAGGCTTTGAACAATTCATTTGTCATGGTGTTTTGATATGCAATGCTTAGGAAAGTAAAATCGTTCATTAAAAAAcaacattatttatttttaatggcCAGGACATGGAAGACTTTTAAATGGGGCATTGAAAAGAAGAGCTGATGGttggcaaataattacaattaattGATTTGACTTATATATCGCCTTTCTAGAcacacaaagtgctttacatagTAATTATGACCAAAGAAAACCATTTCTTTGTTTCATGAAATCAACAATATAACTTCATAGCAGACTGAATGAAGCGCTCTCATCCGCTTATGTGTTACTGTTGACTAAATTAATTGTTCAATTGAGACTGTCCTAAACAACAGTCACTCACTCAACTACAGTCTCCTAGGGATTTTTCTGGCCTAACACATACATAACAGCACTGAATCATTATTccatgacatactgtatattgacAAAAAGACATGCTGCCATTGATCATTCTAAACCAATGAAACGTCGGTCCACGGACAGACGTTATTTCTTTACTTGCCAAGCAGGACTTTCTTTGAATATATTACACTTGAATTCACAAGACCATTTAAAAGACAATAAAATATGATGCAAATGGCATCACTATAACAGGCTGCATGTACAGTAAATGGAATGGGGTATACCTCAATTCAAATGATCAATATTTCCCTGATTGGAAGTATATCCATCTATACTAAAGCCTATCCTTCGATCATTAGTCAATTATGAAACCCATTTAAACAGTTAAAATTAAGCTCAATGGGCATATCatccctctctactgtatattttATTCCTAGTCATGAGTACTAATGGAAAAACTTAAATTAGGCTATTTCCTTTGGTTGCAGCATACTAAAAACTGATAGGAATAGTCCTCACACTAGAGTGTACTGTATATAACGAAGGGACGCACCCTTTCCTGAAAGAGCACAAGATATGAAACTTGCAACTCACTTAATTTACTTAGCAAATTTTCATTACAAAAGTGTGATTTCTTGTCCTGTGCGGCACGtcgcaattattattattttttaaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgacagcctacgaacagtgggttaactgccagttcaggggcagctcggggatttgaactctcggttactagtccaatgctctaaccactaggctaccctgccgccctaatGGCATTAGCTAAGTATCATTGAGGAGAAGAAGGGGATAAAAGCCCTGGAAACTAGAAGATTCCGATTCAGGACCCCGCTAGAAAAATCCCTCAACATTTTGACAAACAGGAACTTTGCCGACTCTGAGAAACTGGTTGTAGGCTACAGGACTGAAAACACTCAAATCCAAGACAATTTCAAACAACTTAGTGACATTAATTAAATATACAGTGCACTGACTCTGCTGCTATTGGCTCCTGGAAATGTGCAAAGAAGTTCTGTGCTGATCAAGGGACGCTTGACGCTGTCTGGCACTGGTTCGAGGCAGGTGTTGATGGGTCACCAAGACCACCACGACAGCTAGCCCTGCTAACACTGAGACAACAGGGAGTCGATGGCCAGACCACATGGCCACCCCTTTCACACCAACATGTCAAGGCCTTGCCATGTTAAAAAGAAGACAAGCCCAGAGTTGGGCCTTCCCTTAGAAAAAAACCATGGTGAAAATCTGCCCCTCATCCTATTTTTTGTCTCCCTCATAAGAAAAAGGCATAGAGATTAGATTTTTAGTTGGTCAATGTTCACGTTTTCACCGTGAACCAGTGCCAGAGGAAAAGCGAGGTACTAACACATTATAAAAAAAGTTGGTTACAGTACAATTAAACTAGAGAGTGGTCGTGTGGCTGTGTCGTACCCACTGTGAAGGGAAGAGAAGCCTAAGTGACATAAGGGGGTCTTCAGCTCAAAGCCTGTGCCTGGAGTCATGACTGTAGCTTCCGGGGGAGCCGTTACGGTTGCGGTGGGGCTTGTACGTGTCCTGATAGGGGTCATGATAATTCTCCTCCACCAGGGGGTAGTGGACCTGGTCCCGGCTGTGCTGCGAGCCGGAGGACAGGCGGTTACGGCTCTTCCTCTGCCGCTCATTGTGGTAGTTCTCGTCTGATGGCGAGTGTTCTCCTGCTGTGTGATTGCTGTTCCTGTTTGTGTTTCTTTGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2066831 True 2866 lncRNA 0.40 2 37218976 37221865

Neighbor

gene id symbol gene type direction distance location
hacd2 hacd2 coding downstream 101139 37105485 ~ 37117837 (-)
LOC110501809 adcy5 coding downstream 119355 36980096 ~ 37099621 (-)
LOC110501806 sema5b coding downstream 381393 36552698 ~ 36837583 (-)
hspbap1 hspbap1 coding downstream 777614 36405741 ~ 36441362 (-)
LOC110502097 LOC106582309 coding downstream 900591 36248076 ~ 36318385 (-)
LOC110501816 LOC106582342 coding upstream 136279 37358144 ~ 37390316 (-)
LOC110501817 LOC106582339 coding upstream 177205 37399070 ~ 37411510 (-)
LOC110501818 LOC106582337 coding upstream 211068 37432933 ~ 37528626 (-)
LOC110501819 LOC106582336 coding upstream 323861 37545726 ~ 37575934 (-)
LOC110502101 LOC106582334 coding upstream 354550 37576415 ~ 37723467 (-)
G1806535 NA non-coding downstream 26920 37191055 ~ 37192056 (-)
G1806511 NA non-coding downstream 67114 37151656 ~ 37151862 (-)
G1806403 NA non-coding downstream 246036 36962661 ~ 36972940 (-)
G1806401 NA non-coding downstream 273518 36944865 ~ 36945458 (-)
G1806395 NA non-coding downstream 279306 36939401 ~ 36939670 (-)
G1806558 LOC106582344 non-coding upstream 9455 37231320 ~ 37232061 (-)
G1806590 LOC106600293 non-coding upstream 67253 37289118 ~ 37293571 (-)
G1806609 NA non-coding upstream 125647 37347512 ~ 37349257 (-)
G1806686 NA non-coding upstream 254098 37475963 ~ 37482618 (-)
G1806687 NA non-coding upstream 254471 37476336 ~ 37483685 (-)
G1806449 NA other downstream 106502 37043561 ~ 37112474 (-)
G1806393 NA other downstream 282889 36935658 ~ 36936087 (-)
G1805927 LOC106582360 other downstream 1159208 36057844 ~ 36059768 (-)
LOC110502094 LOC106582301 other downstream 1999277 35138330 ~ 35471205 (-)
G1807020 LOC105030512 other upstream 538106 37759971 ~ 37760248 (-)
G1807750 LOC106582372 other upstream 971557 38193422 ~ 38195096 (-)
G1807731 NA other upstream 986925 38208790 ~ 38241273 (-)
LOC110502145 LOC106586333 other upstream 1354001 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1722271 38944136 ~ 38944530 (-)

Expression


Co-expression Network