G1806590 (LOC106600293)


Basic Information

Item Value
gene id G1806590
gene name LOC106600293
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37289118 ~ 37293571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2066896
CTCACTTGCTATGTCATAGACATGCCTGGCATGGACAACATCAGTGGAGTCTGGCAGACAGGTCCAGTTGTGCAGTCGAGTTACATATTTGGCATGGTTGACCTGGATCTGGTTCTTCTTGGCCAACTCAAAGGCCAACATGTCCAATGGGAGATGGAACTTGGTCTTGGACTGGTGGAAGTCCTTCTTGTACAGAGCATCACTGGCAATCTTGGCTGAGTTAATAGCCAGCATGAGCAGAGGGTCTTCCTCGACACAGCGGGCTCCAATGTGGTGGCCAATCTGCTTACGGTAGCCAGTCTTGTACTTGTGCTACAGAAGGCAAATATGAAATGGCAGTGTCGaggattgtttttattttacagATGTACATTTGATATATTGTGTAATGAAATCGTAAAGAAACGGAATCGCTTATGATGGATAGATGTTCAATGAACTTACATCACTGATAATTTCCCTGCCGTGCTTGGCTGCGATGACAGCAATGGCATCATTGCGCAAATCATAGCCCTTCTTCTTATCCTCTACCATTGCTTTCCTGTATTGGTT

Function

NR:

description
PREDICTED: nebulin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2066896 True 552 lncRNA 0.45 2 37289118 37293571

Neighbor

gene id symbol gene type direction distance location
hacd2 hacd2 coding downstream 171281 37105485 ~ 37117837 (-)
LOC110501809 adcy5 coding downstream 189497 36980096 ~ 37099621 (-)
LOC110501806 sema5b coding downstream 451535 36552698 ~ 36837583 (-)
hspbap1 hspbap1 coding downstream 847756 36405741 ~ 36441362 (-)
LOC110502097 LOC106582309 coding downstream 970733 36248076 ~ 36318385 (-)
LOC110501816 LOC106582342 coding upstream 64573 37358144 ~ 37390316 (-)
LOC110501817 LOC106582339 coding upstream 105499 37399070 ~ 37411510 (-)
LOC110501818 LOC106582337 coding upstream 139362 37432933 ~ 37528626 (-)
LOC110501819 LOC106582336 coding upstream 252155 37545726 ~ 37575934 (-)
LOC110502101 LOC106582334 coding upstream 282844 37576415 ~ 37723467 (-)
G1806558 LOC106582344 non-coding downstream 57057 37231320 ~ 37232061 (-)
G1806539 LOC106582346 non-coding downstream 67253 37218976 ~ 37221865 (-)
G1806535 NA non-coding downstream 97062 37191055 ~ 37192056 (-)
G1806511 NA non-coding downstream 137256 37151656 ~ 37151862 (-)
G1806403 NA non-coding downstream 316178 36962661 ~ 36972940 (-)
G1806609 NA non-coding upstream 53941 37347512 ~ 37349257 (-)
G1806686 NA non-coding upstream 182392 37475963 ~ 37482618 (-)
G1806687 NA non-coding upstream 182765 37476336 ~ 37483685 (-)
G1806708 NA non-coding upstream 235794 37529365 ~ 37529684 (-)
G1806717 NA non-coding upstream 245729 37539300 ~ 37539499 (-)
G1806449 NA other downstream 176644 37043561 ~ 37112474 (-)
G1806393 NA other downstream 353031 36935658 ~ 36936087 (-)
G1805927 LOC106582360 other downstream 1229350 36057844 ~ 36059768 (-)
LOC110502094 LOC106582301 other downstream 2069419 35138330 ~ 35471205 (-)
G1807020 LOC105030512 other upstream 466400 37759971 ~ 37760248 (-)
G1807750 LOC106582372 other upstream 899851 38193422 ~ 38195096 (-)
G1807731 NA other upstream 915219 38208790 ~ 38241273 (-)
LOC110502145 LOC106586333 other upstream 1282295 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1650565 38944136 ~ 38944530 (-)

Expression


Co-expression Network