G1807587 (LOC100380630)


Basic Information

Item Value
gene id G1807587
gene name LOC100380630
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37864964 ~ 37866937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2068053
TATGTGTCCCTCCTGTGGCCCTAGTATGagtaagaatgtgtgtgtgtgttacctgaggcgGTGGATGTTCTACGGAGCAGGTTGGGGTGTTGTTTGCTATGGGTCCCAGAGCCGTGGATGGAATGTGCTGGGCTGGTCCAGCTCCTACGCTCCCCAGTGGTTGACATCAAAGCCACATCCGGTTTCTCTGTCACCGAGGGAGGCCGCCCCTCCTCTTTATTGAAGCGGAACAGGTTGACGAAGGAGCTGTAGGCTGATCGGAGCGGAGGCTCGTCCTGCTCTGGAGTCAGGGGTTTGAAGTGTGTCAGGTGAGAAGGGCTGCCAGGGGAGATGGGAGGCTTCACACTGCAATCCAGCGTAGAGGAGGAGGATTTGTCCTCAGCCTCCATGTCACTGCTCCTGTTGGAAAGACAAATGATCTCTTGGTGAGACCAGAACATTGTGGTCACGTCATGGTGATCCTCTGCTTGATCGTGTGATAACAACTAGGCCTAAACAACTAGGCCTAAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2068053 True 511 lncRNA 0.54 2 37864964 37866937

Neighbor

gene id symbol gene type direction distance location
LOC110501831 LOC106582318 coding downstream 4056 37851828 ~ 37860908 (-)
LOC110502128 LOC106582310 coding downstream 24288 37839001 ~ 37840676 (-)
LOC110502140 LOC106582322 coding downstream 29792 37834053 ~ 37835172 (-)
LOC110502127 LOC106582319 coding downstream 33479 37830542 ~ 37831485 (-)
LOC110501821 LOC106582326 coding downstream 64873 37798979 ~ 37800091 (-)
LOC110502141 LOC106582316 coding upstream 36211 37903148 ~ 37967285 (-)
LOC110501835 LOC106586372 coding upstream 105275 37972212 ~ 37995938 (-)
LOC110501838 LOC100136430 coding upstream 137892 38004829 ~ 38012137 (-)
LOC110501839 rftn2 coding upstream 162565 38029502 ~ 38063991 (-)
LOC110502144 LOC106586344 coding upstream 437531 38304468 ~ 38383049 (-)
G1807075 NA non-coding downstream 14590 37850101 ~ 37850374 (-)
G1807074 NA non-coding downstream 16196 37848033 ~ 37848768 (-)
G1807030 NA non-coding downstream 90440 37774208 ~ 37774524 (-)
G1807018 NA non-coding downstream 105829 37758858 ~ 37759135 (-)
G1807588 NA non-coding upstream 5830 37872767 ~ 37873860 (-)
G1807607 NA non-coding upstream 60900 37927837 ~ 37928265 (-)
G1807673 NA non-coding upstream 203929 38070866 ~ 38072483 (-)
G1807754 NA non-coding upstream 335064 38202001 ~ 38202385 (-)
G1807731 NA non-coding upstream 341853 38208790 ~ 38241273 (-)
G1807020 LOC105030512 other downstream 104716 37759971 ~ 37760248 (-)
G1806449 NA other downstream 752490 37043561 ~ 37112474 (-)
G1806393 NA other downstream 928877 36935658 ~ 36936087 (-)
LOC110501806 sema5b other downstream 1286253 36552698 ~ 36837583 (-)
G1805927 LOC106582360 other downstream 1805196 36057844 ~ 36059768 (-)
G1807750 LOC106582372 other upstream 326485 38193422 ~ 38195096 (-)
LOC110502145 LOC106586333 other upstream 708929 38520872 ~ 38726596 (-)
G1808299 NA other upstream 1077199 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2869711 40736648 ~ 40813437 (-)

Expression


Co-expression Network