G1807922


Basic Information

Item Value
gene id G1807922
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38581084 ~ 38597380 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2068440
tactatgacagcctaccaaaaggcaaaaggcctcctgtggggacggggactgggattaaaaatacaaataaatgtaatataaatataggacaaaacacacatcacaacaagagagacaacacaacactacataaagaaagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacataagacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacactacataaagagagacaacccaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacaacacaacactacataaagagagacaccacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacataagacaacactacataaagagagacaacacaacactacataaagagagacataagacaacaacatagcaaggaagCAACAcgcgacaacacagcatggtagcaacacaacatgacaacaacatggtagcaacacaacatgacaacaacatggtatcaacacaacatggcagcagcacaacatggtagcagcacaaaacagggtacaaacattgttgggcacagacaacagtacgcagggaaagaaggtagagacaataatACATCATGCAAtgcagtaagtgtccatgattgagtctttgaatgaagagattgagataaaac
>TU2068439
caacactacataaagagagacaacccaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacccaacactacataaagagagacaacacaacactacataaagagagacaacacaacactaca
>TU2068441
tactatgacagcctaccaaaaggcaaaaggcctcctgtggggacggggactgggattaaaaatacaaataaatgtaatataaatataggacaaaacacacatcacaacaagagagacaacacaacactacataaagaaagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacataagacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacactacataaagagagacaacccaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacataagacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacctaagacaacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacacaacactacataaagagagacaacccaacactacataaagagagacaacacaacactacataaagagagacaacacaacactaca

Function

NR:

description
hypothetical protein EH28_05749

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2068440 False 974 lncRNA 0.38 4 38581084 38597380
TU2068439 False 390 lncRNA 0.37 3 38596177 38596743
TU2068441 True 891 lncRNA 0.37 4 38596177 38597380

Neighbor

gene id symbol gene type direction distance location
LOC110501850 dbr1 coding downstream 89589 38485821 ~ 38491495 (-)
LOC110501846 NA coding downstream 108600 38467191 ~ 38472484 (-)
LOC110501845 LOC106582367 coding downstream 130341 38438184 ~ 38450743 (-)
LOC110502144 LOC106586344 coding downstream 198035 38304468 ~ 38383049 (-)
LOC110501839 rftn2 coding downstream 517093 38029502 ~ 38063991 (-)
ccnyl1 LOC106582379 coding upstream 277034 38874414 ~ 38892741 (-)
LOC110501854 LOC106582380 coding upstream 302104 38899484 ~ 38929741 (-)
LOC118943608 NA coding upstream 314084 38911464 ~ 38913545 (-)
LOC118943609 NA coding upstream 381127 38975839 ~ 38989602 (-)
klf7b klf7 coding upstream 401302 38998682 ~ 39154770 (-)
G1807918 NA non-coding downstream 16141 38564180 ~ 38564943 (-)
G1807917 NA non-coding downstream 20732 38559942 ~ 38560352 (-)
G1807893 NA non-coding downstream 76853 38503858 ~ 38504231 (-)
G1807805 NA non-coding downstream 268423 38312255 ~ 38312661 (-)
G1807785 NA non-coding downstream 280890 38299184 ~ 38300194 (-)
G1807942 NA non-coding upstream 45633 38643013 ~ 38643294 (-)
G1807959 NA non-coding upstream 90600 38687980 ~ 38688208 (-)
G1807965 NA non-coding upstream 101716 38699096 ~ 38699359 (-)
G1807973 NA non-coding upstream 114028 38711408 ~ 38711616 (-)
G1807966 LOC106582376 non-coding upstream 145631 38743011 ~ 38754494 (-)
G1807731 NA other downstream 367897 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 385988 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 820836 37759971 ~ 37760248 (-)
G1806449 NA other downstream 1468610 37043561 ~ 37112474 (-)
G1806393 NA other downstream 1644997 36935658 ~ 36936087 (-)
G1808299 NA other upstream 346756 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 2139268 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 2850519 41447899 ~ 41523764 (-)
G1811042 NA other upstream 3007594 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 3789442 42386822 ~ 42389273 (-)

Expression


Co-expression Network