G1807966 (LOC106582376)


Basic Information

Item Value
gene id G1807966
gene name LOC106582376
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 38743011 ~ 38754494 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2068489
ccgattgttatgaaaacttgaaattggcccttccgattaatcggtcaacctctaattttAATGAATGGTTAGTAAGGGTTCTACTGCTGAAGGGGTGGTAAAAGGTTACCTGGTCTCCGTGGGCATGCCTGCCGATGATGATTGGTTTGACCCAGCCGGGCACCAGGCGGGGGATGTTCTTACAGATGATGGCCTCCCTGAACACGGTGCCTCCCAGGATGTTACGGATGGTCCCGTTGGGCGAGCGCCACATCTGCTTTAGCTTGAACTCCTCCACCCGGTTTTCATCCGGCGTGATGGTGGCACACTTAATGCCCACGTTGTAGCGCCGCGTCGCCTCCGCCGCCTCAACCGTCACCTTGTCGTCCGTGGCATCACGGTTCTCCATGCCCAGGTCGTAGCTGAGGGAAGGGCTGTGCAGGTCCATCTCCAGGTAGGGGAAGATGAGCTTCTCCTTAATGAGCTCCCAGATGACTCTGGTCATCTCATCCCCCTGCATCTCCACCACCGACCCTGCCTTGATCTTCTGGGACATCCTGAAACCTGGGGGAGGCAGAGTAGGAGAGAGTCAGTCAATAGTAACAAGAAAATGGCAGCTGGCAAGCAAGCCTTCTGCATGTGGAAGTTATTTCAGCAGTGATACAGTCAAGGCAATTTCCCCCTGGTCTAAAGTACATATCAAATTAATTTACAACTTGGCTTACTAGACCAGTGAGTCAG
>TU2068488
TTTTCTCCAAAACCCATTTATTGAGTTGATATTCTGACCACACTGTCAAGTACAAACCTGCATCCCCTGGTTGTGTGTGCTTACTGGCAGAGGAAGGTACTTGGACACTCATttctgtatgggggggggggggggggggggggtaaggtgTTAAGTGTGTTTTTAATATCTTACGACCTCTTCCATAACCACAAACAGGGAGTGAGTGATGCTAGTATAGCTTTGTGAATCAATGACACCAAGCCAAGACGGTCAAAATCTAAACAGGCTACAGTAGTTGTCAtggcataatatatatatatatataaaatgctgTGACAGACTGAAGTCACGTTACATAAGACAAGGCAACAGAAGGGTAAGATCACCCTCAGGCAGGACTGGCGATCACTGCTCACTGaccgacaacacacacacaaaaaaaacaacacatagTTCAATTAGCGTAGGGAACACTGGTTATTTCTGTGTCCATCATTCATTAAAAACAGTCATACTTGGCAGAATTATAAACACATATTTCACTAGGCgattgcttaaaaaaaaaatcacaagttATGCTTGTGATCTCAAATTAGGATTCAGGCCACTTAGATTGGCTGAGTGTTACCACTATGGTCTAGCCATATCTTTTGGTAAGTCATCAATGGAGAAGAGGGcctcacatcaacaacctgcccagggactgcggttgaaaattagtcggctggctaaaaccagcacttttactgaaacgttgattaatgtgcactgtccctgtaaaaatacaaataaactcaCCCTACATCTGAACCCTACATATAGTAAAACATGGGATTAATATAGCACTTTTCAAGGACCAAAGTCTTTAAacaattgtaaaaataaaaattaaaaaaagaaaGTTTACAAAAGCATGAATAAAGAGAGCGGGTGGGCTGAAATAAGAGAGATGTATCAGTGTATGGGGAGGGTTAGGATACGAacctggtttagggtaaggggcaTGTGGGTTGGTAGGGGACAAGAATGTcagagggggggggggggggggggggggggtcgggctTATGGAGGGAACTTGAGTTGACGCTAGAGAGTAGTGAGTTACAGTAGTCAAGACAGGAGGAGATGGAATGCGTGTTTCAACGGCAGGACAGGTGGACCTGGCTTTGGCAATGTTGCGGAGGTGGAAGAATGACAAtttgccagtctgtctgtcttatgTGATGGTCAAAGGAGAGGGTGAAGCCAaggttgagtgtgtgtggggagaCAGTGGTGTCAATCGCAAGATTACCAGCTTTGGTGAAGATGGATTTGGTGTCTATGAGTAAGAGTTCCGTTTTATAAATGCTTAGCTTGAGGAAGTGTTGTTGCAGCCATGTTTTTAATGCCGAAAAAGGAAATTCAATGTGGGTCGAATAGGGATTTGGTGCCGAGGTGGTCAGGTGACACCCAGATCAAGGAAGATGAAGCGTAAGGGGCCCAGCACAGTACCTTGGGGGACACCCTGTGTGACTGCAGTGGCGTCTGAGGTATGGCCATTGAGGGAGATGTAGTGGGTCCGGTTTATGAGGTATGATTGTAGCCAGGAAAGTGCTGTACCCTCAATCTGATGACTCAGTGCTAAAAGCGGCACTCTGGTCAAGGAGAATCAGGATGTTAAGGGCACCAGCATCAGCAGAGGTGAGGTCATTCACAACTTTGAGTGCAGTTTCAGTACTGTGGTGGAAACCAGACTGGAGGGGCTTGAATTAGTTGTTGACTAGCAGGTGGGTTTGAATTGGGAGGCAACAGTCTGGAACAGAGTCTTGGAAAGGAAGGTTGGAAATTGTGCAGAAAGATGGTGGTGTCCGTTCCCGGCATTTATAAGATTGGGGGAGGGGTGTCTGCAGCTGTTCTGTAGGGGTGAGATCCGTGGGCAAGGGAGAGGTTGATGGTGTGTGATATATGGACAGAGGGCAGGCAGGCTTTAATGAGAACAGTAGGGAGAGGATCcagggatggacagagagcaggcagGCTTTAATGAGAACAGAGCTGTGATGAGTAAGTTGTGTGAAGTGTATTTGTGAGCTTTTCCTTGAAAATAGCTGACGAAGGAGTTGTAGATTTCAgtggagggagtagagaaggTGTCGTCACGAGGCTGAAGTAGTTTGCTGACAGTGGAGAACAGAGTTCAGGAGTTCTTATTGAAGCAAGCAGGGCATGGACCTCAGGGGTCAACCAGGGGGAGAAGGACACGGTTTAGtttggagggggtgggggagagaattGGGGGAGACAGAGCAGTGTTGACTTGGGCAGCTAGTTCATCAGGTGAATTGGGGGCGTGGTCAAGAGGCAGAGCAGATGGCATTAGAGTTGTAGGGGGTCAACAGCTTTTATGATGCAGAAGGAGTTGGTCTGTATTGTTGGGTAACATTGAAACAGTCCTTAACAGCAATGAAATAAGAGGCATGTTGAGTTTAATGAGTCCACATTAATATTCATATTGCCAAGCAACAGCAAGCATGGGGAGAGTGGGACAGCAATGGCAAGTAGTTTAGATAGGAATGATTCATTAGCTTTGGGaggacatccccccccccccctccccctggacAAGACACCTCCTTGAAGCAGACAGACTGCTTGTGGAGGGAATGATTAAGTCTCAAGGGTCCTAGGTCTTCTAGAAGCTCTGGTTGCGTTCTGGGCAGACAGTCCCCTTCATTGGTTCAGTGTTGGCCGGGGCCCATAGTCCCTGCTGTCAATAGTGTGTGCGTTTAAAGTTGGGAGATGAGGTGATCACAGTTTGGGTTGGTTGGACATCTTGGTCTTCAGGTTCTCTGACAGTTTATCCAGGAACTCAAAGGTGTTCAGGTAGTCTGAGCGTTTGGTATCTGCCATGCCTTTGATACAGATAGCCAGATCCTTGGTCATGAAGCCAGCCTCGATGGTCTCCACGCAGACGACCTCCAGGGCCTCAGCAAACACACGCAGCTCTGCGTTGTCATCCAGCTTTGCCCGGTGCAGCAGCCCCCGCGACCAAGCAAAGATGGacgctgcgcacacacacacacacacgttagggACATGT

Function

NR:

description
isocitrate dehydrogenase [NADP] cytoplasmic-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2068489 False 720 lncRNA 0.53 2 38743011 38747084
TU2068488 True 3067 lncRNA 0.47 4 38751145 38754494

Neighbor

gene id symbol gene type direction distance location
LOC110502145 LOC106586333 coding downstream 16415 38520872 ~ 38726596 (-)
LOC110501850 dbr1 coding downstream 251516 38485821 ~ 38491495 (-)
LOC110501846 NA coding downstream 270527 38467191 ~ 38472484 (-)
LOC110501845 LOC106582367 coding downstream 292268 38438184 ~ 38450743 (-)
LOC110502144 LOC106586344 coding downstream 359962 38304468 ~ 38383049 (-)
ccnyl1 LOC106582379 coding upstream 119920 38874414 ~ 38892741 (-)
LOC110501854 LOC106582380 coding upstream 144990 38899484 ~ 38929741 (-)
LOC118943608 NA coding upstream 156970 38911464 ~ 38913545 (-)
LOC118943609 NA coding upstream 224013 38975839 ~ 38989602 (-)
klf7b klf7 coding upstream 244188 38998682 ~ 39154770 (-)
G1807973 NA non-coding downstream 31395 38711408 ~ 38711616 (-)
G1807965 NA non-coding downstream 43652 38699096 ~ 38699359 (-)
G1807959 NA non-coding downstream 54803 38687980 ~ 38688208 (-)
G1807942 NA non-coding downstream 99717 38643013 ~ 38643294 (-)
G1807922 NA non-coding downstream 145631 38581084 ~ 38597380 (-)
G1808023 NA non-coding upstream 30990 38785484 ~ 38786661 (-)
G1808026 NA non-coding upstream 34064 38788558 ~ 38796069 (-)
G1808054 NA non-coding upstream 84500 38838994 ~ 38839656 (-)
G1808056 NA non-coding upstream 86408 38840902 ~ 38843281 (-)
G1808061 NA non-coding upstream 108194 38862688 ~ 38863121 (-)
G1807731 NA other downstream 529824 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 547915 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 982763 37759971 ~ 37760248 (-)
G1806449 NA other downstream 1630537 37043561 ~ 37112474 (-)
G1808299 NA other upstream 189642 38944136 ~ 38944530 (-)
LOC110501878 LOC106582406 other upstream 1982154 40736648 ~ 40813437 (-)
LOC110501886 rhg15 other upstream 2693405 41447899 ~ 41523764 (-)
G1811042 NA other upstream 2850480 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 3632328 42386822 ~ 42389273 (-)

Expression


Co-expression Network