XLOC_037234 (dachd)



Basic Information


Item Value
gene id XLOC_037234
gene name dachd
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 30820290 ~ 31062704 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00073279
TTAACGTTTAAACAGAGCCGTCTGACATCCAAAATGATTGACACGAATCGTAGAAAGATAAAACAAGTAGAAAAGAAATGAACAATAGGAATCAACATGAAAACACTCGTTCTTCAGCTTTACGAAGAAAACTTTATGACTGGCTTTTACAAGACGACCAGAGGGATAGTATCAGTGAAAGGCACTCAGTGTTCAGTTATTAATCTCCCGCCGCCGTTGGCCCTTTCATAAAAGGAGTTTCCAGCAGGAAGTCAAAAGTGTATCTGTCTTTTCCATCTTCAGTCCCTGTAGAGGTCACTGTTGCTTGGCACAGCTGAAAAACAACCGAGGCTCAAACGGAAGCTCAAGACCCGGGAGGCCTCCAAAACGGACCCAGAGTGTGACATCGCCGGAGAACCCTCACATCATGCCGCACACGGTGCCGGGCCTCATGTCGCCAGGAATCATTCCCCCCACAGGCCTCACAGCTGCAGCTGCAGCAGCAGCTGCCGCCACCAATGCCGCCATCGCAGAGGCCATGAAGGTGAAGAAGATCAAGCTGGAGGTGATGAGCAGCTACCACGGCAGTAACACCCACAACGGGCCTGATTCTGAGAATGGAGACCTGAGCTCCAGTGTGGGCTTGGAGCTGCCGTTTATGATGATGCCCCACCCCCTGATCCCTGTCAGCCTGCCTCCCGCATCCGTCACAATGGCGATGAGTCAGATGAACCACCTCAGCACCATCGCCAATATGGCCGCCGCAGCACAGGGACAGAGTGCCCCATCCCGAATGGTGAC
>TCONS_00073280
TCATTTTCTTCCTGTCATTCTCTCCCAATCTTTCTCAGAGTCCTAATTTCAGCACGGCACCTCTCCACGTCCATTGGCGCGTCGGCGGAGCGCACTCGGGTGGATTTCTTCTTCTTTGCGCTACTTTTGCAGACTGGCTCTCTTTCCCATCTGAACTTACTTGATAGGCGGACAGGCAGACAGAACACACCATGGCCGTACCGGCTGCTCTGATTCCCCCATCGGCTCTGGTCCATCCGTGTCCGATCTCAACTTCTTCGTCAgcatcatcagcatcatcatcatcatgctcCGCGACCGCAGCATCATCATCCTCGCCCTCGGCCACTTCTGCGTCTCCTTCTCAGTCAGCGACCCAGAATCTGTTCCGCGCGGATCTGATCAGCACCAACTGCACCAGTAGCATCCCACTGGCCGGCAAGCCCGTGTACTCGACCCCGTCTCCAGTTGAAAACACTCCGCAAAATAATGAGTGTCGGATGGTGGAGCTGAGGGGCGCAAAGGTGGCCTCGTTCACAGTGGACGGACAGGAGCTCATCTGCCTGCCCCAGGCATTTGACTTGTTTCTCAAACACCTGGTCGGGGGTCTGCACACCGTCTACACCAAACTCAAGCGGCTGGAGATCACGCCGGTGGTGTGTAACGTGGAGCAGGTCCGCATCCTGCGCGGGCTGGGGGCCATCCAGCCCGGGGTCAACCGCTGCAAACTCATCTCCAGAAAAGACTTCGAGACCCTCTACAACGACTGCACCAATGCCAGCTCAAGACCCGGGAGGCCTCCAAAACGGACCCAGAGTGTGACATCGCCGGAGAACCCTCACATCATGCCGCACACGGTGCCGGGCCTCATGTCGCCAGGAATCATTCCCCCCACAGGCCTCACAGCTGCAGCTGCAGCAGCAGCTGCCGCCACCAATGCCGCCATCGCAGAGGCCATGAAGGTGAAGAAGATCAAGCTGGAGGTGATGAGCAGCTACCACGGCAGTAACACCCACAACGGGCCTGATTCTGAGAATGGAGACCTGAGCTCCAGTGTGGGCTTGGAGCTGCCGTTTATGATGATGCCCCACCCCCTGATCCCTGTCAGCCTGCCTCCCGCATCCGTCACAATGGCGATGAGTCAGATGAACCACCTCAGCACCATCGCCAATATGGCCGCCGCAGCACAGGGACAGAGTGCCCCATCCCGAATGGTGACATCAGTGATTAAGGAACGGGTCCCcgacagtccctcccctgccccCTCTCTGGAAGACGGCAGGAGGCCGGGGAGCCGTCCCTCGTCCCAGCGCAGCAGCAGCGTCTCCAGCTCTCCAGCACACACCGAGAGCTCCTCCGACAGAATGCCTGTGCATCAGAATGGGCTGTCGATGAACCATGCGTTACTGGGTCTGTCTCCCAGCATCTTACCCGGGCCTAAAGAGGGCGATCTGGCTCACGACATCGTCCATAACGCCAAGAGAATGCATCTGGAGAAAGAAGAAATTCCCATGTGCACGCCGACAGCCAGAGACAGCTATGAGAGACTGTCGCTGGCGGGGCAGACTTTACCTCCAGGATTCCCCTCACCCTTCCTCTTCCCTGATGGCCTGTCGTCTATAGAAACCCTGCTGACTAACATCCAGGGTTTACTGAAGGTGGCGATTGATAACGCTCGTGCTCAGGAGAAACAAGTACAGCTGGAGAAAACGGAGCTGAAGATGGAGCTgtttagagagagagagctcaGAGAAACCCTGGAGAAACAACTGGCTGTCGAGCAGAAGAACAGAGCGATCATTCAGAAAAGGTTGAAGAAAGAGAAGAAAGCCAAGAGGAAATTGCAGGAGGCGCTGGAATATGAGTCGAAGCGACGAGAGCAGGCGGAGCAGACCCTGAAACAGACATCACCTACAGAAAGTCTCAGATCACTCAATGACTCGTTGACCCAGGAGATAGAGACTGACCGCAGCAGTGGCAGAACAGATGCTGAGAGGACAATACAAGcagaTGGAAGACTTTTTCTGAAAACCACAGTGATGTACTAACAGCATGACGTTGAAGACTGGCCACTTGTGTTGTAGGACGATTCTCCAGAGTCCCTTCGCAGGGTAATTTAGTTACAGAAACAGGTCAATCGCTCATAGAGGTGCACCAAGGGTTTATGCTGGGCCCGATGTGGAGGATGGATTGTGTCCGAATGTAGTATTAGGACTCGTATTATCACTGATATCAACATTATAATATACCAGATGTGGGATTGGATGTGACGAGTTGACCAAGGTgacaatttgagcacagtaaaacgtACCTTTTGGTACACTCGGTgataatatttacaacaaattcACAGCACTGAAGattttttatactgtatttaaacCAGCGAGAAAGCTTCGGAAATTCAATCGGATTCAgaggttttgttttgta

Function


symbol description
dachd Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within glomerular filtration. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; otic vesicle; and pronephros.

GO:

id name namespace
GO:0003094 glomerular filtration biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070427-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within glomerular filtration. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including immature eye; nervous system; neural tube; otic vesicle; and pronephros.

Ensembl:

ensembl_id ENSDARG00000069440

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00073279 False 780 processed_transcript 0.52 6 30820290 31015326
TCONS_00073280 True 2412 mRNA 0.54 11 30890549 31062704

Neighbor


gene id symbol gene type direction distance location
XLOC_037233 klf12b coding upstream 36398 30720048 ~ 30783892 (+)
XLOC_037232 BX571809.3 coding upstream 103384 30695283 ~ 30716906 (+)
XLOC_037231 tbc1d4 coding upstream 180928 30585552 ~ 30639362 (+)
XLOC_037230 commd6 coding upstream 238054 30577925 ~ 30582236 (+)
XLOC_037229 acp6 coding upstream 329876 30478768 ~ 30490414 (+)
XLOC_037235 clybl coding downstream 13192 31075896 ~ 31259145 (+)
XLOC_037236 NA coding downstream 202170 31264874 ~ 31269143 (+)
XLOC_037237 NA coding downstream 217697 31280401 ~ 31342609 (+)
XLOC_037238 NA coding downstream 284333 31347037 ~ 31428734 (+)
XLOC_037239 BX571700.1 coding downstream 432944 31495648 ~ 31495765 (+)
XLOC_037223 NA non-coding upstream 554867 30264357 ~ 30265423 (+)
XLOC_037222 NA non-coding upstream 570866 30248495 ~ 30249424 (+)
XLOC_037219 NA non-coding upstream 665010 30154784 ~ 30155280 (+)
XLOC_037214 BX649442.1 non-coding upstream 1126091 29690678 ~ 29694199 (+)
XLOC_037243 NA non-coding downstream 850792 31913496 ~ 31914462 (+)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_01110684_01111118 NA coding CI01000009 null 1110684 ~ 1111601 (+)
bowfin (Amia calva) AMCG00014562 dach1,LOC105030421,LOC106586049 coding CM030128.1 CM030128.1 17935166 ~ 17935714 (-)