XLOC_037235 (clybl)


Basic Information

Item Value
gene id XLOC_037235
gene name clybl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 31075896 ~ 31259145 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073281
gtttttaatgtattattggTTATAAAAAGAGAGTGGTGTTAGGAAAGTGAGAAGACAAATCATACAAAATGAGTATTCAATTAAAATTGACGTACCGTTGACCGTAATGACTTTCGATAGAAGTCACGCTTTTAGCCCCGCCTTTTCCTACGGTATTGAGGCGTGCTGGCTGTTTACACTAACTTACAGTTCCGCCTGTGCGCCAAATTCAAACGAGAAGGAATTCGTTTTTGAGTGTAAACACTTTATATTTGCGTGTTTTATTTTCATCTAAGCCAATCAAAATGTTTTCACAAGACACGGATTAATAGAGGAGTAATATGAACTAGCCTACTTTTATAACACGTTTAAGGGCTGTTTGGAGTTTGAGAGCTAGAGTACAGCACAGTCGCCATTTTTTACAGATGAATCGTCAACACAAGCTTGGATCGACATTAAATCGACGCCTGCAGCCAATAGGAAGAGCTCATGTGAGGACGCCGAAGACATGGCGCTGCACATAGGACGTGCTGCTTACAGAAGACAATCTGTGCTGGGGATAAGTCGTCTGCTTTTGTCTGCGGTTCCCTGGTGTCATTCTAGCCAGCGTTCCCACCATGCTCCTGGCACCACTCTGAAATACATACCACGCCGTGCCGTGTTGTACGTTCCAGGCAACGATGAGAGAAAACTCCAAAAACTGGCTTCATTGGATGTGGACTGCGCCGTTCTAGACTGTGAGGATGGAGTCGCCCTCAACAAGAAGgatGCAGCTCGAGAAACCATCCCAAAGATGCTGGCAGAGCTGGATCTGGGACGTACGGAGAAGTGTGTACGGGTGAACTCTGTGTCCAGTGGCCTGGCTGAAGCCGACATGGAGGTTATTCTGCAGTCGGACGTTCTGCCCACAGCTCTCATGCTGCCAAAGGTGGAGGACACAGGAGAGGTGCAGTGGTTTGTTGACAGGTTTCAGCAGTACTTAAAAGGCAGAGAGCTTGAGGAACCCATCCGCTTGGTCACCTTTGTGGAAACTGCTGTGGGTCTGCTGAATTTTAAGGCAGTGTGTGAAGCACTTCGAGATCTTGGGCCAAAGGCAGGTTTTCATCATGACGGAGTTGTCTTCGGGTCTGATGACTTCTGTGCCAGCATAGGAGCCACACGCACTAAAGATGCTAAAGAACTCCTGTATGCTCGGCAGAAAGTGGTGGTCACCACCAAAGCATTCGGCCTCCAGGCGATCGACCTTGTTTACATTGACTATAAGGATGTGGAAGGACTGAGACAGCAGGCCAGAGAGGGCGCACTCATGGGCTTCACCGGAAAGCAGGTGATTCACCCAAACCAAATCAAGGCTGTTCAAGAAGAATTTGCCCCAAGTCCAGAGCGAATCAAGTGGGCCACAGAGCTGATCGCTGCCTTCGAGGAACACCAGAAGTTGGGAAAGGGGGCTTTCACCTTTCATGGCAGTATGATTGACATGCCATCTCTGAAGCAGGCTCAGAACATTGTCACGATGGCTTCAACTGTTCAGGGAAAGTGA
>TCONS_00075148
AATTGACGTACCGTTGACCGTAATGACTTTCGATAGAAGTCACGCTTTTAGCCCCGCCTTTTCCTACGGTATTGAGGCGTGCTGGCTGTTTACACTAACTTACAGTTCCGCCTGTGCGCCAAATTCAAACGAGAAGGAATTCGTTTTTGAGTGTAAACACTTTATATTTGCGTGTTTTATTTTCATCTAAGCCAATCAAAATGTTTTCACAAGACACGGATTAATAGAGGAGTAATATGAACTAGCCTACTTTTATAACACGTTTAAGGGCTGTTTGGAGTTTGAGAGCTAGAGTACAGCACAGTCGCCATTTTTTACAGATGAATCGTCAACACAAGCTTGGATCGACATTAAATGACGATGCCCATGAGGAATGCAGGGTGGAGGCTGGTCTGTGAAGACATCTTCAAAACCACAGAAACACACTTTTCATCATGAAACTCTGCAATCTTTCTTCTGTCCGTGCTCTTCTGATCAAACATGTCCTCTGGCCTGAAGATTCTGCAGCGCACGGTCCCCCTTGGAGGCAGGCGATACAGGGTGTGTCAAAAAGGGCCACTAGAAGCAAACAAGAGACCTGTGATTCACAAATCCGAAGGCTCGCTCCATGGCTGCTTACTCATCTGTTAAAAACAGAGTGATCTGGAAAGTTTGTATGGAAGGCCTTTTGACAGAGCCCTGCTGCTCTGTCAGTGCAGCACATGCTCTAGGCACTGGCATCCCCTATTGCCTTCCAGGTCATTGG
>TCONS_00073282
GCGTGCTGGCTGTTTACACTAACTTACAGTTCCGCCTGTGCGCCAAATTCAAACGAGAAGGAATTCGTTTTTGAGTGTAAACACTTTATATTTGCGTGTTTTATTTTCATCTAAGCCAATCAAAATGTTTTCACAAGACACGGATTAATAGAGGAGTAATATGAACTAGCCTACTTTTATAACACGTTTAAGGGCTGTTTGGAGTTTGAGAGCTAGAGTACAGCACAGTCGCCATTTTTTACAGATGAATCGTCAACACAAGCTTGGATCGACATTAAATGACGATGCCCATGAGGAATGCAGGGTGGAGGCTGGTCTGTGAAGACATCTTCAAAACCACAGAAACACACTTTTCATCATGAAACTCTGCAATCTTTCTTCTGTCCGTGCTCTTCTGATCAAACATGTCCTCTGGCCTGAAGgTTTTTACAGAGTTCCTCTCCTTCAAGCAATGCTGAACACCAGCACCGCATAGCCAGAGAAAGGGTTTTTGAAACCTGACATTTCCTCAGAGTCCCCTGCTGACTTAATCATGGCAAATATTGCATGTCATTTGTTTGCCACGCATGGACCTGGCTGATGGTAGTAGTAGTAATTCACCACCGCTGTGCGCCGGTTCCTGGAGTGCACTCCAGTGATGGTGTCGTGCACGTCAGCGCATAGACATGACAACCAGGATCATCACCAAACTGAGACCATGCTTGGAACAGAGTATTGCTTCAGTAACACACTCTACACTGtatgctgcatttaaacaaaacactgAAACCGTGTGTGTGCAGTCATTTACAATGTTTTATAcacattatttatgcttttaattgtGTGGCATTGTGCTTTTATTTAAGTGAAtagcattattaaaatattttattatat
>TCONS_00073283
GGAAGAGCTCATGTGAGGACGCCGAAGACATGGCGCTGCACATAGGACGTGCTGCTTACAGAAGACAATCTGTGCTGGGGATAAGTCGTCTGCTTTTGTCTGCGGTTCCCTGGTGTCATTCTAGCCAGCGTTCCCACCATGCTCCTGGCACCACTCTGAAATACATACCACGCCGTGCCGTGTTGTACGTTCCAGGCAACGATGAGAGAAAACTCCAAAAACTGGCTTCATTGGATGTGGACTGCGCCGTTCTAGACTGTGAGGATGGAGTCGCCCTCAACAAGAAGgatGCAGCTCGAGAAACCATCCCAAAGATGCTGGCAGAGCTGGATCTGGGACGTACGGAGAAGTGTGTACGGGTGAACTCTGTGTCCAGTGGCCTGGCTGAAGCCGACATGGAGGTTATTCTGCAGTCGGACGTTCTGCCCACAGCTCTCATGCTGCCAAAGGTGGAGGACACAGGAGAGGTGCAGTGGTTTGTTGACAGGTTTCAGCAGTACTTAAAAGGCAGAGAGCTTGAGGAACCCATCCGCTTGGTCACCTTTGTGGAAACTGCTGTGGGTCTGCTGAATTTTAAGGCAGTGTGTGAAGCACTTCGAGATCTTGGGCCAAAGGCAGGTTTTCATCATGACGGAGTTGTCTTCGGGTCTGATGACTTCTGTGCCAGCATAGGAGCCACACGCACTAAAGATGCTAAAGAACTCCTGTATGCTCGGCAGAAAGTGGTGGTCACCACCAAAGCATTCGGCCTCCAGGCGATCGACCTTGTTTACATTGACTATAAGGATGTGGAAGGACTGAGACAGCAGGCCAGAGAGGGCGCACTCATGGGCTTCACCGGAAAGCAGGTGATTCACCCAAACCAAATCAAGGCTGTTCAAGAAGAATTTGCCCCAAGTCCAGAGCGAATCAAGTGGGCCACAGAGCTGATCGCTGCCTTCGAGGAACACCAGAAGTTGGGAAAGGGGGCTTTCACCTTTCATGGCAGTATGATTGACATGCCATCTCTGAAGCAGGCTCAGAACATTGTCACGATGGCTTCAACTGTTCAGGGAAAGTGAGCCAAACCTGAGCTCCTCAGACATCAAAATCTGCACCATGCTGGCCGTGCCGTTCACTTTACGTCAAGAGCCAAAACCATCTCTGCGTTGTTTAACCAGCAACGGAAATGATGTGCTATGGGATATATATTTATGTAGATTTCAGATTAGTTGATTGATTGTTGAAATTTCTGGTTCGTTACCATTTCAcgcattattttgtgtgtgtgtctatgtgtgcatgtgtaatgcCGCCCCCTGCATCTCTGATGTCAGGGCAGGCGATTGGCCGTGGTAAAGGTTGAGCTTGCCCAGCGAAAGGCCAAACAAACAGAGCTGCCCTGCCGTTGAGCTTCCATTCAGCCCGAAGGCTCCTCCAGGCCCCGGCACATCAAAGTGCCCTTTGCCAAGAAGCCGCCGCAAATTTGCTAAAACCAACATTAGGAGAATGAGCCTGTGAGCCTGCTCTAAATTGTTGGCCTTTGTTTCAGGGGACTCAGCAAGCCAGTTTATTCTTCAAGACGAGGTTGAATGTGTCTGCAGCCTGGCGTAAGCTCTGCACGGTGTGCCACACGCTCGCTTGCAAACACGTACACAAAGGGCCCTGTGAGGGCTCCCTCTATGTAAATATCAGCATTTACCAGGGCTTTGTTACCCGGTCAGTGGTTCCCATCTCTCCATCCAGCTTCGGAGTGGTCGTGAACATGGCCAAGTGCTCAAAAGCCGAGCCGCTGTTGTCCATTTCACCAGTGTTCCTCACACACACTTTGTCAAGAATGCttcttttgaaataaaaactCCAGGATGTCATTCCTAGTGAATGACCATCTATTCACCCTC
>TCONS_00073284
AATGAACTGACTGCTGAGCTGCCGCCACGGAGCTTGGTCCCAAACTATACTGTACTTCACACTCGATTTATTCTCCAGATGGCAAGACTACGCAGCCCTGCCGGGAGGGGCCACCTCTTCCACTGAAGTGTGAAAGTGGACGGATGTTGTTTTCGGATCCTCTGTGATCAGCTCCGAGCTCCCTCAAACCACCCGGCACCgatGCAGCTCGAGAAACCATCCCAAAGATGCTGGCAGAGCTGGATCTGGGACGTACGGAGAAGTGTGTACGGGTGAACTCTGTGTCCAGTGGCCTGGCTGAAGCCGACATGGAGGTTATTCTGCAGTCGGACGTTCTGCCCACAGCTCTCATGCTGCCAAAGGTGGAGGACACAGGAGAGGTGCAGTGGTTTGTTGACAGGTTTCAGCAGTACTTAAAAGGCAGAGAGCTTGAGGAACCCATCCGCTTGGTCACCTTTGTGGAAACTGCTGTGGGTCTGCTGAATTTTAAGGCAGTGTGTGAAGCACTTCGAGATCTTGGGCCAAAGGCAGGTTTTCATCATGACGGAGTTGTCTTCGGGTCTGATGACTTCTGTGCCAGCATAGG

Function

symbol description
clybl Predicted to enable (S)-citramalyl-CoA lyase activity. Predicted to be involved in regulation of cobalamin metabolic process. Is expressed in brain. Orthologous to human CLYBL (citramalyl-CoA lyase).

GO:

id name namespace
GO:0106064 regulation of cobalamin metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0047777 (S)-citramalyl-CoA lyase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030516-6 Predicted to enable (S)-citramalyl-CoA lyase activity. Predicted to be involved in regulation of cobalamin metabolic process. Is expressed in brain. Orthologous to human CLYBL (citramalyl-CoA lyase).

Ensembl:

ensembl_id ENSDARG00000029729 ENSDARG00000095476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073281 False 1519 mRNA 0.48 9 31075896 31258326
TCONS_00075148 False 745 lncRNA 0.45 3 31075980 31156228
TCONS_00073282 False 879 processed_transcript 0.41 3 31076056 31166402
TCONS_00073283 False 1880 mRNA 0.51 8 31167711 31259145
TCONS_00073284 True 586 mRNA 0.54 4 31222026 31248677

Neighbor

gene id symbol gene type direction distance location
XLOC_037234 dachd coding upstream 13192 30820290 ~ 31062704 (+)
XLOC_037233 klf12b coding upstream 292004 30720048 ~ 30783892 (+)
XLOC_037232 BX571809.3 coding upstream 358990 30695283 ~ 30716906 (+)
XLOC_037231 tbc1d4 coding upstream 436534 30585552 ~ 30639362 (+)
XLOC_037230 commd6 coding upstream 493660 30577925 ~ 30582236 (+)
XLOC_037236 NA coding downstream 5729 31264874 ~ 31269143 (+)
XLOC_037237 NA coding downstream 21256 31280401 ~ 31342609 (+)
XLOC_037238 NA coding downstream 87892 31347037 ~ 31428734 (+)
XLOC_037239 BX571700.1 coding downstream 236503 31495648 ~ 31495765 (+)
XLOC_037240 si:ch211-168k14.2 coding downstream 275456 31534601 ~ 31549563 (+)
XLOC_037223 NA non-coding upstream 810473 30264357 ~ 30265423 (+)
XLOC_037222 NA non-coding upstream 826472 30248495 ~ 30249424 (+)
XLOC_037219 NA non-coding upstream 920616 30154784 ~ 30155280 (+)
XLOC_037214 BX649442.1 non-coding upstream 1381697 29690678 ~ 29694199 (+)
XLOC_037243 NA non-coding downstream 654351 31913496 ~ 31914462 (+)

Expression


Co-expression Network