G1809405


Basic Information

Item Value
gene id G1809405
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40170392 ~ 40183895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2070163
AGCATAGATTGGGTAGAGTTCGGGGGCGTTAAGATCCCAGGTGTTAATGTGTGAGCCGATCTGTACACCAGGGAAGCCCAGCTGCCTAACACAACGCTTCATCTCCAGCACAGCCAGGTCAGGAGCCTGCATGGGCAGGGTACCCAGCCCCACGAAGCGTCGAGGGTGGAGCGCCACTGTCTTAGCCAGGTCGTCATTCAGGATCCCACACAGGTCCAGGGTGTCATGAGGTTTGGCCTGTCACAACAGGGAAGTGAACCCAACACAACCAAAGCCTTAGTAATGCATTGGCAGCTATGTTTACAGAGAAGTAAGCACATCAAAGTCTTAGAAAAGGGAGaagtgatgtaaaaaaaaaaacatgtcagagAGTAAAAGTaaggatatatttttttatttttgcattGTAACTTAAAAAATACCATAATATATCTGGCACTAATAGTGGAATGATAGagtttcacagtattacttaccCAACAGTGTTTATGATTGGCTGTAATATTCACCTGTTGATTTCTCCCACCAGAGCAGCATCTGTTGTCAAACTGGGAAAGCTGTTCTGACTTTTTGGCTGTGTGGTCTTGTGGAAATCGctctgtcatttcctggttgctaaaattctacacTGTTCACTCAATTTCAGTGTGTGgttgcaacctggtctcagagcatttctgCTTATTTTGTATGTTAATCAGATGACgctccaattagtatgatatgttacatatcatatggtatgtattagtTTGTGAATGTCCATCACCTATTTCGTATGATAAATTGCGAATTATAATGTGTATGATATTTTATATGTtacatgttacgaatttgcaaaatgtacaatatattaCAAATTTGAAAAACTTTCAATATGTTACAAATGTGCAAAACCTATGGTATGTTccaaattctagctaggtggctaggtggctaggtaTCCAACatcattagctaggctaggggttaaggttaggactaagtttaggagttaggttagatGGTTAAGTTTAGCGTTAGAGGAAGGCTTATCTAAAAGAGTTAAGGTTAGCgttaggtgaagggttaaggttagggttagctaacatgaaAAAGTTGCTAATAAGgtcaaatgctaaagttgtccatgatgatatTTGACCTCACAACctttgggttgctagacattc
>TU2070162
AGCATAGATTGGGTAGAGTTCGGGGGCGTTAAGATCCCAGGTGTTAATGTGTGAGCCGATCTGTACACCAGGGAAGCCCAGCTGCCTAACACAACGCTTCATCTCCAGCACAGCCAGGTCAGGAGCCTGCATGGGCAGGGTACCCAGCCCCACGAAGCGTCGAGGGTGGAGCGCCACTGTCTTAGCCAGGTCGTCATTCAGGATCCCACACAGGTCCAGGGTGTCATGAGGTTTGGCCCAGTAGTTAAACATGACAGGCACTGTGGACAAGGCTTGGACCGTCACCCcatGTGCATCCATGTCCCGAATCCTTGCGGCTGCATCCCAACAGTTCTCCTGGATCACGCGGAACAACTTCCCGTCTTTCATCATTTTTGCTTCCCCCTTGCAGTGATGGTGAAGCTGGATAAATCCATCATATCCATATCTCTCTTTCAGATTGGGCCATTCCTTGGGTAAAATGTGATTATGAATATCAATCTTCATCCTGATCAATCTACTACGACAAGTGTTTTTCATACAATTCGCCTAATGTGAGACAGGTAGTAAACGGTGTCTATCATGATCATTGAGC
>TU2070161
AGCATAGATTGGGTAGAGTTCGGGGGCGTTAAGATCCCAGGTGTTAATGTGTGAGCCGATCTGTACACCAGGGAAGCCCAGCTGCCTAACACAACGCTTCATCTCCAGCACAGCCAGGTCAGGAGCCTGCATGGGCAGGGTACCCAGCCCCACGAAGCGTCGAGGGTGGAGCGCCACTGTCTTAGCCAGGTCGTCATTCAGGATCCCACACAGGTCCAGGGTGTCATGAGGTTTGGCCCAGTAGTTAAACATGACAGGCACTGTGGACAAGGCTTGGACCGTCACCCcatGTGCATCCATGTCCCGAATCCTTGCGGCTGCATCCCAACAGTTCTCCTGGATCACGCGGAACAACTTCCCGTCTTTCATCATTTTTGCTTCCCCCTAAAATATGGATTGGCACAAGACTCCAGAGAATGAAGGACACTTGATTTGTTCTTTTTTTGGTTTCTATGCCTTCCATTGTCTTCATTGCTTCATGCCTACAATTTCTGTTTGATGAGCAAGATgatgtgccactagagattctgggtttgagtccagccTCTGTTGCAGCCGGTTGCGACCGGgcgacccatggggcggtgcacaattggttcagcatcgtccgggttaggggaaggtttggccggaaTCTATGTCCTTGACTCATTGTGCACTagtaactcctgtggcgggctgggtgcagtgcatgctgacacagtcgccaggtgtacggtgttttctccgacacattggtgcggctggcttccgggttaagtgggcggaggatgcacggctctctacctttgcctctcccgattccgtacgggagttgcagcgatgagacaagactgtaactaccaattgtggagaaaaaggggtaataaacaatagaaaataaaaaaacaagaacacTTCTATGTCATATAAGAAGCAAATCACTCAAGTGAAATTGAAATGTGTATGTGTAATCAGCCACCTGATGGCAGCAAAGAGAAACATTTGGAAACTAGAAAGGGAGTTGAAAATGTCTCATTGGCTATTACTTTACATTCAGGTGTCAACACACACAACAGcaagtactcacacacacacacacataagctgTGTTTACAAGCAGCCCAAGGCTGATCACTAATTGATAATTTaatcaatcagatcagctctgaaaaatatctgatgtgaaaagatctgatgtgattggtcaattGGACCAATTAGGGTAACAAATACTTCAACACAGTCATAGTGACACACAGGTGTTGCTGGACCCAGCGGGTGTCAGTGCCTGTATGAAATCTTACTGTGCTACCCACTCACTACCCACAGGTGGCGCCAAGAGGGAGGGTTGGCTTTGTGTTAGCCCCGCCGAGAAACAGGCTTCGAGGCGTGACAACAATGTGATTTTTGAGGTATGGCAACACTAGACTAGCTTTGTGTGAATGAGATCTTGTAGAGAGCCCAGGAGAGCCTGAGTAGAGGGCTGGCCtgctcattaggcaggattaggtgGTCGCCTACAGCCACAGATTGACAAGGGCGGaattttctgagctaaactgaccaagatgCACCTCCAACAATACATAAAACCTCACATAATTCTGGCCAAAATCAAcaacaatttctctcaaccagtggtATATGGGTTTTTTAGGGGAGTATTGATGCCACGCTGtgataagcagtgcccactttgtcaaaggcagTGAGGCAAAATATTTATCTTGTCCATTCTCAACGTGCCTCTCCAGGGTCCTCTTGGAGAGACACATCGCTGCAGCGCCCTACCAACATTCCGTCAAGAAAAAGAATGTAACATAAATCATGTAGCAGATGTAGCACATGGTAGAAAAGAGTATGTGGAGGTACAATGTAATGAGACGGACACTTTTTACATCATGCAGGTTTCTCCGACCTAATAGCCTAACCTAAATGATGCCCAATCAAATAAACAATGTGCTGACATGTTAACAGACAAcatatcctaaaaacaggacaCGTCAAAGTAAAATTGACAATATGGGATGGACAATCAGGCTACTGTTGTCCAGGAGTTTCATCCCGTGAACTAAAATATGATGCGGTTTCAGGTTTGTATCCTTACATTTTTTTACAAGCTGATCATAgcgaaaaaataaaataattttgcATTTCTCTCTGGGgaaacacattgcaaataggctcaggataactcctcctgataaagttggggagctgatattcagagcttaaatagCCAAACTGATTAGTTGGAATCAGGACCAATCAAACCAattcacattttatttttcaCTTGCGcacgaacacaacaggtgtagacattacagtgaaatgcttactgacaagccctttaatcaacaatgcagttttaagacaaATAAGTGTTAATAAGAAagtttttacaaaaaaaactgaagaaaaaaatatataaatttaaaaaataaaaataaagaagaaaaatagaaaaattatAATAACTAAGGATCATTaacaaaataacagtagcaaggctatatacagagggtaccgggtcagagtcaatgtgcagggcacaggttagtcaaagtaattgaagtaatatgtacatgtaggtagaggtaaagtgactgcatggataataaacagagagtaacagcagcgtaaaaatgggggTGGAGTGGGGGTGACAATccaaatagtccaggtggccatttgatgacctgttcaggagtcttatgacttggcggtagaagctgttaagaagccttttagacctagacttggtgctccggtatcgcttgccgtgcggtagcagagagaacagtctatgactagggtggctggagactttgtCAATTTtaagggctttcctctgacaccgcctggtatagaggccctggatggcaggaagcttggccccagtgatttttctgggccgtacgcactaccctctgtagtgccttgcggtcggaggccgagcagttgccttaccaggcagtgatgcaaccagtcataaagctctcgatggtgcagctgtagaactttttgaggatcagaggacccatgccaaatcttttttccgtctcctgaggggggatagGGGTtcttgtgccctcttcacgactgtcttggtgtgtttggaccatgatagtttgttggtgatgtggacacctcaacctgctccactgcagccctatCAATGAGAATTGGGGCacgctcggtcctccttttcctgtagtccacaattatctccttgtcttgatcacgttgagggagcgGTTGTTatcttggcaccacactgctaggtctctgacctcctccttataggctgtctcatcgttgtcggtgatcaggcctaccactgttgtgtcatcggcaaacttaatgatggtgtaggAGATGTGCTtgtccatgcagtcatgggtgaacagggagtgcaggagggggctgagcacgcacccctgaggggcccccgtgttgaggatcagcgtgacagatgtgtcgttacctacccttaccacctgggtcgGCCcggcaggaagtccaggatccagttgcagagtgaggtgtttagtctcagggttcttagcttagtgatgagctttgagggcactatggtgttgaacgcttaGCTGTAGTCAaaaaatagcattctcacataggtgtcccttttgtccaggtgggaaagggcagtgtggagtgcaatggagattgcaacatctgtggatctgttggggcggtatgcaaattggagtgggtctagggtttctgggataatggtgttgatatgagccatgaccagcctttcaaagcacttcatggctacagttAAGAGTggtacaggtcggtagtcatttaggcaggttaccttggtgttcttggttacagggactatgggggtctgcttgaaacatgtacagtgcctt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2070163 False 1172 lncRNA 0.40 3 40170392 40183895
TU2070162 False 574 lncRNA 0.50 5 40171771 40183895
TU2070161 True 3890 lncRNA 0.46 3 40178052 40183895

Neighbor

gene id symbol gene type direction distance location
LOC110501866 LOC106582396 coding downstream 251 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 143239 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 317023 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 322395 39736429 ~ 39847997 (-)
LOC110501861 LOC106582392 coding downstream 439278 39683220 ~ 39731114 (-)
LOC118943637 NA coding upstream 99510 40283405 ~ 40284842 (-)
LOC110501872 LOC106582401 coding upstream 267702 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 491408 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 591313 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 651281 40835176 ~ 40882242 (-)
G1809372 NA non-coding downstream 42228 40127010 ~ 40128164 (-)
G1809337 NA non-coding downstream 86400 40080294 ~ 40083992 (-)
G1809313 NA non-coding downstream 132612 40037538 ~ 40037780 (-)
G1809307 NA non-coding downstream 139001 40031132 ~ 40031391 (-)
G1809304 NA non-coding downstream 144513 40025648 ~ 40025879 (-)
G1809410 NA non-coding upstream 550 40184445 ~ 40185458 (-)
G1809418 ccnt2 non-coding upstream 13700 40197595 ~ 40200422 (-)
G1809427 NA non-coding upstream 26794 40210689 ~ 40210912 (-)
G1809446 NA non-coding upstream 40761 40224656 ~ 40224887 (-)
G1809465 NA non-coding upstream 59780 40243675 ~ 40243908 (-)
G1808299 NA other downstream 1225862 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1558105 38520872 ~ 38726596 (-)
G1807731 NA other downstream 1957205 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 1975296 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2410144 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1264004 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1421079 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 2202927 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2420808 42603998 ~ 42605768 (-)

Expression


Co-expression Network