G1809683 (r3hdm1)


Basic Information

Item Value
gene id G1809683
gene name r3hdm1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40391252 ~ 40391974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2070471
CTCAGCTTGGCTTGTGGATGCAGACAAAAGGTTTCTAAATGGCTGGCATGTCTACACacctggggttgtttttcagcgtATTTACTAAGAACTCATGGACATCGATCCCGGTAGAGTCGGTGTAGTCTTGACTGGAATCTCTGGACAGCATCTTCCTGGGCATCCTTTCAGTCTTCTCCAGCAGCTTCTCCACTCCTTTATCTTGGTCCACTTCATTCTTGATGGGCGATGACGCCTCCTCCTCTTTGTCAAACGACTGGGTGAGCTGGATCTCAATTTTCTCCTTCAAAATAAAGACGAAGACTGTTGTAGTCACATTTTATGAAACAGAAAATGGGATCAGGTGTTCTCTTTTCTCAGTAGCTTGCTATCCATCAGG

Function

symbol description
r3hdm1 Is expressed in forebrain; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human R3HDM1 (R3H domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2070471 True 379 lncRNA 0.46 2 40391252 40391974

Neighbor

gene id symbol gene type direction distance location
LOC118943637 NA coding downstream 106410 40283405 ~ 40284842 (-)
LOC110501866 LOC106582396 coding downstream 221111 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 364099 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 537883 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 543255 39736429 ~ 39847997 (-)
LOC110501872 LOC106582401 coding upstream 59623 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 283329 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 383234 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 443202 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 491622 40883596 ~ 40929237 (-)
G1809541 NA non-coding downstream 98213 40292840 ~ 40293039 (-)
G1809509 NA non-coding downstream 117504 40273400 ~ 40273748 (-)
G1809505 NA non-coding downstream 120287 40270740 ~ 40270965 (-)
G1809498 NA non-coding downstream 125369 40265654 ~ 40265883 (-)
G1809496 NA non-coding downstream 125921 40265068 ~ 40265331 (-)
G1809737 ubxn4 non-coding upstream 47136 40439110 ~ 40440904 (-)
G1809742 ubxn4 non-coding upstream 50488 40442462 ~ 40448038 (-)
G1809751 NA non-coding upstream 98723 40490697 ~ 40491131 (-)
G1809756 NA non-coding upstream 111607 40503581 ~ 40503819 (-)
G1809758 NA non-coding upstream 115457 40507431 ~ 40507932 (-)
G1808299 NA other downstream 1446722 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1778965 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2178065 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2196156 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2631004 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 1055925 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1213000 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1994848 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2212729 42603998 ~ 42605768 (-)

Expression


Co-expression Network