G1809742 (ubxn4)


Basic Information

Item Value
gene id G1809742
gene name ubxn4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40442462 ~ 40448038 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2070548
accataaaagccgcggcccttgcagagcaaggggaacaactacttcaggtctcagaggaaGTGACGTCACCTGATTgaaacgctaactagctagccatttcatatCGGTTACACACGCATGTACAAGGACTAAATCTAAACGTGCAGTGATATGACACGGTCTTGTTGTGAATTCACAAATGACAAAGTGGAAAATGGGAGTTGTATTTGGTTTCCAGTCACTCACAGGCAGCAGGACTATGGAGGCACCGGGAGCCAGCTCCAACTCCAGTAGAGTCTTACCCAGGTCGTCAGCCGTAAACTCCCTGCGAGGGAACATAGTCGCCAGGGAGAAGTTGCCATAGCGATTTCCCACTTCATTGACAGCAAACTGCCGAGCCTCATTCAGTCTGGCCTCTGAGGAGAACTGCCTGGTGAAGAAAGAACCATCTGGGAGACGGAACTGTATTCTTGCTATGGCGCTCCTCTCCCTGTGTACGATCTCCTTCTTGGCTTCCGCCTCTGCTTGTCTGGCCTGCAGTGCTGCCAGCCGGgctgcctccacctcctcctgGTTATTGGCATAGCGGGCAGCTCTGTCAGCACGGTCCAGGGCGATCTGTGCTTTGACACGCTCCCTGGCAGCCTTCtcctctgccttctctctgctcctctcatccATAATGCGCTTGGTCTTCTCATCCTCGTTCTTCCTCTTGAAGTCCAGCATCTCCTTCCCCatcttccttctctccatctcctttatTTCACCCTCCTCTTTCTTTTTCTGATCCCGTCTCTCCTCCAGTTTCTTTGTTAACC

Function

symbol description
ubxn4 Orthologous to human UBXN4 (UBX domain protein 4).

NR:

description
UBX domain-containing protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2070548 True 801 lncRNA 0.52 5 40442462 40448038

Neighbor

gene id symbol gene type direction distance location
LOC118943637 NA coding downstream 157620 40283405 ~ 40284842 (-)
LOC110501866 LOC106582396 coding downstream 272321 40084457 ~ 40170141 (-)
LOC110501865 LOC106582395 coding downstream 415309 39960431 ~ 40027153 (-)
tmem177 tm177 coding downstream 589093 39850855 ~ 39853369 (-)
LOC110502147 LOC106582393 coding downstream 594465 39736429 ~ 39847997 (-)
LOC110501872 LOC106582401 coding upstream 3559 40451597 ~ 40494774 (-)
LOC110501875 LOC106582404 coding upstream 227265 40675303 ~ 40684544 (-)
LOC110501878 LOC106582406 coding upstream 327170 40736648 ~ 40813437 (-)
LOC110501879 LOC106586322 coding upstream 387138 40835176 ~ 40882242 (-)
LOC110502149 LOC106586321 coding upstream 435558 40883596 ~ 40929237 (-)
G1809737 ubxn4 non-coding downstream 1558 40439110 ~ 40440904 (-)
G1809683 r3hdm1 non-coding downstream 50488 40391252 ~ 40391974 (-)
G1809541 NA non-coding downstream 149423 40292840 ~ 40293039 (-)
G1809509 NA non-coding downstream 168714 40273400 ~ 40273748 (-)
G1809505 NA non-coding downstream 171497 40270740 ~ 40270965 (-)
G1809751 NA non-coding upstream 42659 40490697 ~ 40491131 (-)
G1809756 NA non-coding upstream 55543 40503581 ~ 40503819 (-)
G1809758 NA non-coding upstream 59393 40507431 ~ 40507932 (-)
G1809768 NA non-coding upstream 65754 40513792 ~ 40514154 (-)
G1809779 NA non-coding upstream 73366 40521404 ~ 40521605 (-)
G1808299 NA other downstream 1497932 38944136 ~ 38944530 (-)
LOC110502145 LOC106586333 other downstream 1830175 38520872 ~ 38726596 (-)
G1807731 NA other downstream 2229275 38208790 ~ 38241273 (-)
G1807750 LOC106582372 other downstream 2247366 38193422 ~ 38195096 (-)
G1807020 LOC105030512 other downstream 2682214 37759971 ~ 37760248 (-)
LOC110501886 rhg15 other upstream 999861 41447899 ~ 41523764 (-)
G1811042 NA other upstream 1156936 41604974 ~ 41605231 (-)
G1812079 LOC106582433 other upstream 1938784 42386822 ~ 42389273 (-)
LOC110502155 psd12 other upstream 2156665 42603998 ~ 42605768 (-)

Expression


Co-expression Network