XLOC_037245 (si:dkey-83m22.7)


Basic Information

Item Value
gene id XLOC_037245
gene name si:dkey-83m22.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32069957 ~ 32071430 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073295
GGCTCAAAACTCAAGCTGAACTCATATCTCTGTTCATTGTGACTTCTGGAGCAGGTGGATTTAGGCTACACTAAAGACAAGTAATGCAACATCAAGCCTACCAACCCGTCGTGCCATGTGTTAATAAATATCTGCAATATCGATGGGACAAAAACTGCTATGAGATACACAGGGACAagGTTAAATCTGCGAAACCCACAATCAACACATCTCCGCCGAAAACCTACAGCCATCTACTTGTCAAGTTGAAGAAAAGCCAGGTAGGATTGCTGATCGACCACCAGATGTCGACTTTTACACTGTTTTGGTAATTGTTAATCCATTTCAGTCTTTCATCTTTCATAAACAGCTTGAAGAAGAACGGGTTTCTAAAATCAAAAGAGAAAACGAAATGCTTCTACATAAAATGTCCCACATAATGCAGACCAAAGGGGGCGttgactgtaaaaatatttatgtgAAGAAAAGGTATACATGCAACTTTTTATAGAATTAacttataattaatttgttaattaacacGTTCATGTTTTTGCTTCAGTCTTGGCTCAGAAAAAAAGACAACTGGAACTGCTCCACATCACCAGAGAGAATCAGCGCATCCTCCAGCGTTTGTCGACCTGCAGGCCGCGTTACAGCGTTCAGGCGTGGCAGGAGCAGTGGCTCAGGCACCTGGAGCTCATGGAGGCCATAGGCAGATATCCGCGTTTCTTCAGCGCACAGGGGTCCTACTTGCCACCTCTGTGAACAGACTATAAGACGATGGATCAGTCGTCTG
>TCONS_00073296
TTCATTGTGACTTCTGGAGCAGGTGGATTTAGGCTACACTAAAGACAAGTAATGCAACATCAAGCCTACCAACCCGTCGTGCCATGTGTTAATAAATATCTGCAATATCGATGGGACAAAAACTGCTATGAGATACACAGGGACAagGTTAAATCTGCGAAACCCACAATCAACACATCTCCGCCGAAAACCTACAGCCATCTACTTGTCAAGTTGAAGAAAAGCCAGCTTGAAGAAGAACGGGTTTCTAAAATCAAAAGAGAAAACGAAATGCTTCTACATAAAATGTCCCACATAATGCAGACCAAAGGGGGCGttgactgtaaaaatatttatgtgAAGAAAAGTCTTGGCTCAGAAAAAAAGACAACTGGAACTGCTCCACATCACCAGAGAGAATCAGCGCATCCTCCAGCGTTTGTCGACCTGCAGGCCGCGTTACAGCGTTCAGGCGTGGCAGGAGCAGTGGCTCAGGCACCTGGAGCTCATGGAGGCCATAGGCAGATATCCGCGTTTCTTCAGCGCACAGGGGTCCTACTTGCCACCTCTGTGAACAGACTATAAGACGATGGATCAGTCGTCTGTTCACATGGGAAATGAAACGAAGAAGTTTGATGATGAGAAGACGAAATGTGAACATATGTTACATCTGCAAATGCTGTCTAATTGATTTGATTCGTAAACACGCTTTATACTGGACTATTGATTTGGTAAATCAAATCTAAATCATACCCACTAGGTGTCGCTGTATTCTGCCAATCTTCTGAGTTAATTagagattaaagggatagttcatccaaaaatgaaaatttactcactattaattcGCCcacaagtggttataaacctttatgagattctttttTCGGTTGagcacacaa

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0046031 ADP metabolic process biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0060047 heart contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0048770 pigment granule cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0042470 melanosome cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-603 Orthologous to human CFAP97D1 (CFAP97 domain containing 1).

Ensembl:

ensembl_id ENSDARG00000093739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073295 False 778 lncRNA 0.43 3 32069957 32071133
TCONS_00073296 True 881 mRNA 0.42 5 32069989 32071430

Neighbor

gene id symbol gene type direction distance location
XLOC_037244 BX470263.1 coding upstream 76524 31993311 ~ 31993433 (+)
XLOC_037243 NA coding upstream 155495 31913496 ~ 31914462 (+)
XLOC_037242 itgbl1 coding upstream 236392 31752628 ~ 31833565 (+)
XLOC_037241 si:ch211-168k14.2 coding upstream 483001 31556043 ~ 31586956 (+)
XLOC_037240 si:ch211-168k14.2 coding upstream 520394 31534601 ~ 31549563 (+)
XLOC_037246 pikfyve coding downstream 2176 32073606 ~ 32106034 (+)
XLOC_037247 coq10b coding downstream 106620 32178050 ~ 32188445 (+)
XLOC_037248 BX530407.4 coding downstream 117709 32189139 ~ 32192519 (+)
XLOC_037249 NA coding downstream 152265 32223695 ~ 32238109 (+)
XLOC_037250 hspe1 coding downstream 229587 32301017 ~ 32305007 (+)
XLOC_037239 BX571700.1 non-coding upstream 574192 31495648 ~ 31495765 (+)
XLOC_037238 NA non-coding upstream 641223 31347037 ~ 31428734 (+)
XLOC_037237 NA non-coding upstream 727348 31280401 ~ 31342609 (+)
XLOC_037252 NA non-coding downstream 273453 32344883 ~ 32349025 (+)
XLOC_037254 NA non-coding downstream 465316 32536746 ~ 32537384 (+)
XLOC_037257 NA non-coding downstream 820467 32891897 ~ 32895100 (+)

Expression


Co-expression Network