XLOC_037247 (coq10b)


Basic Information

Item Value
gene id XLOC_037247
gene name coq10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32178050 ~ 32188445 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073305
TATATTTTGTCTTTATTATCATGaagtttaaaatgtatacatGTGTAATTACTTTACATTGTGAAAAACTGCTCCATATTATATTTAATTGACTTAGGACTAACTTATATTACTATCAAATTCTGTGACGATAACAGTAATGGCAACAGTAGTTTAGTAGCAATTTCATTGTAACTTAACTGGACAGATAtgcataaatattatttaatttacatatttgttAATTATAATACTTTATAGTAAGCAAAACTTATTAATTCGTTTACACTGACTGTGTCCTCAAACAAATTTAGCAGTAACCTTTACTAACTATGCACTGTAGGTCGCGCAGTCTGGGCAACCCTATCCTGCATCCCGTGACAATTCTGCGCACGCAAACCCTCTGCACAATTAAAACACTTACGTCAGTGAGTGTCATCGATGACGGACGGACGACTCAACGAATCAGAGGCCGTGAAAAACAGCCTCGGCCAATGACATTGTAGGACGGGTCTTCGAGAGGGCTGGTCTTCGAGACGGGAAAAGAGTTCTCGACGGGAGGAGGCGAAAGAGAGGTGAAGTGAAGATGGCGAGAGGCTCCCGGTGTTTGAGGAGAGCGGTAGCGGAGTGTATCAGAAACTTACCGTCCACAGCCGGTCGAGAAACACCAGGGAAGAGTGGAGTGAGATATCTGTCTTCATGTGGGATCTTGATGACCAGGGCGCCGCCCCTCTTCAGGGCTGTATCAAGTCGTGCAGTGGTGGCTCCAGCCAGGAGCTTCTTCAACTTTGCAGAGTCATTCAACAAGAGGAAGGAGTACTCTGAAAGACGCATTATTGGGTACTCAATGCAGGAAATGTATGAGGTTGTGGCCAAAGTTGAAGACTACCTGCTATTCGTGCCCTGGTTTCGCCCTCATTTGGTCAAGGCGTCTTGCTCTGATGGAAAACTCTTCAATCACCTGGAGACAGTGTGGCGCTTCAGTCCTGGCCTTCCTGGCTACCCACGTACATGCACACTCGACTTCGCTATTTCCTTTGAGTTCCGCTCACTCCTGCATTCTCAGTTGGCCACCGTTTTCTTCGATGAGGTCGTGAAGCAAATGGTATCTGCCTTCGAGCGACGGGCATCCAAGCTGTACGGCCCAGAGACGCAGATCCCACGTGAACTGATGTTCCATGAGATCCACCACACGTAG
>TCONS_00073306
CGCGCAGTCTGGGCAACCCTATCCTGCATCCCGTGACAATTCTGCGCACGCAAACCCTCTGCACAATTAAAACACTTACGTCAGTGAGTGTCATCGATGACGGACGGACGACTCAACGAATCAGAGGCCGTGAAAAACAGCCTCGGCCAATGACATTGTAGGACGGGTCTTCGAGAGGGCTGGTCTTCGAGACGGGAAAAGAGTTCTCGACGGGAGGAGGCGAAAGAGAGGTGAAGTGAAGATGGCGAGAGGCTCCCGGTGTTTGAGGAGAGCGGTAGCGGAGTGTATCAGAAACTTACCGTCCACAGCCGGTCGAGAAACACCAGGGAAGAGTGGAGTGAGATATCTGTCTTCATGTGGGATCTTGATGACCAGGGCGCCGCCCCTCTTCAGGGCTGTATCAAGTCGTGCAGTGGTGGCTCCAGCCAGGAGCTTCTTCAACTTTGCAGAGTCATTCAACAAGAGGAAGGAGTACTCTGAAAGACGCATTATTGGGTACTCAATGCAGGAAATGTATGAGGTTGTGGCCAAAGTTGAAGACTACCTGCTATTCGTGCCCTGGTGTAAGAAATCAGATGTTATTTTCCGCCGCTCAGGCTTTTGCAAAGCTAAACTGACTGTAGGCTTCCCTCCTGTGGTAGAAAACTACACCTCTCTCGTTTCTACAGTTCGCCCTCATTTGGTCAAGGCGTCTTGCTCTGATGGAAAACTCTTCAATCACCTGGAGACAGTGTGGCGCTTCAGTCCTGGCCTTCCTGGCTACCCACGTACATGCACACTCGACTTCGCTATTTCCTTTGAGTTCCGCTCACTCCTGCATTCTCAGTTGGCCACCGTTTTCTTCGATGAGGTCGTGAAGCAAATGGTATCTGCCTTCGAGCGACGGGCATCCAAGCTGTACGGCCCAGAGACGCAGATCCCACGTGAACTGATGTTCCATGAGATCCACCACACGTAGTTCATTCCACAGCTTCAGATGGAAGAGAAGAGGGGGTGTTTAGGGAACGGGAGGGTTATTGAAAACATACATATAGAGTATTATAAGGACAATCAGGAGAGCGGGAGCTGTGTGCCTGAATATCGTCAGTGCCTGGTCCAAATAAAACCGTTTCACTttttttatgctaaaaaaaaaaaaaaaaaacatgtggctGGATCTATTCACGTGGGCCTTGCCCTGCTGAGCCCTGCCCCACTACCTCCatgttaactttttttaaaacttgcTGCCCGTATGGCACCTGGAGTCGTATTTTATAATTGAGGACCTTGAGatagttttaaaaaaagctgCCAAAAACCATAATGACTTCATCAACGGCACAAAAGGCAAAGGTCATGGCTTTCTTCGAAAGGACATTACTGTgagatttgttttttataaagtgCATTATTGGAAGGTTGTTGTTTGACGCAGATTGTGACAGGTGAGTGATGTATTTATTAAGAAAGCTTTTAGGTGATCCTTTAAGATTTCAAGAAAGGGACGAGAAGCTTGAGTGCAGAAGACTGACTGTTACTGCAGCCAAATGCACATCAAGTGCTATCAGGGTATCAAGGATAAACTTCAGACTCGGGTCTGATATATTCTTGCATACCAGCACAAATAAgggcttaaaaaacaaaaactacgaGGCTGTAAAACAACATGTCCCTTTCACCAAATTGCCTTGCGCAAGTTATGTAAATTTGCGCAGTGTAGTTCTAGCTGTGGCGCTTCAGTTCACTCCTCAAATAAGAGTGAGATCTGAATATTATTTTAAGAGTCCAGATTAAAGACTGCTTTTCTGTTTTATAGGTGTGCAATATATGTCTATGTTGTTTTTAACAGTGCTTACACATCTCGATATCCACTGCTTTTAAAAGGGCCCAAACTCTGGGAACGGAGGTCGTATTGAGCCTTTTCCCAGAGCTCTCATTAGATCGTAGTGAGGTGTCCGTCGCCACAGACCTTTAAAGATTCCAATCCACACCcttcctttttgtgcttactgCCTTTTTACAGAGAGTTACATTATTTATCCTTATCTTAAAAACATGTATGCGTGCATCCTGTATTTATTTTGGTTATGGGTTAACCACGTGTACATATCTGATGTAAGACCACAGACTAAACGTTAGTGCATCGATGAgctgcaaacaaattaataatcctttttttttcttgcatatatattttttttttggggggggggggagatctctttttcttgttgtttgtttggtttaatTGAGGTGTTTAATGAGTGTGTTGTGGgtgaatatatataaatcctGCCTGCATGGTTTATAAACTATTTTTGTATATAACGCCTAA
>TCONS_00073307
TTGAAGACTACCTGCTATTCGTGCCCTGGTAAAACTACACCTCTCTCGTTTCTACAGTTCGCCCTCATTTGGTCAAGGCGTCTTGCTCTGATGGAAAACTCTTCAATCACCTGGAGACAGTGTGGCGCTTCAGTCCTGGCCTTCCTGGCTACCCACGTACATGCACACTCGACTTCGCTATTTCCTTTGAGTTCCGCTCACTCCTGCATTCTCAGTTGGCCACCGTTTTCTTCGATGAGGTCGTGAAGCAAATGGTATCTGCCTTCGAGCGACGGGCATCCAAGCTGTACGGCCCAGAGACGCAGATCCCACGTGAACTGATGTTCCATGAGATCCACCACACGTAGTTCATTCCACAGCTTCAGATGGAAGAGAAGAGGGGGTGTTTAGGGAACGGGAGGGTTATTGAAAACATACATATAGAGTATTATAAGGACAATCAGGAGAGCGGGAGCTGTGTGCCTGAATATCGTCAGTGCCTGGTCCAAATAAAACCGTTTCACTttttttatg

Function

symbol description
coq10b Predicted to enable ubiquinone binding activity. Predicted to be involved in cellular respiration and ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human COQ10B (coenzyme Q10B).

GO:

id name namespace
GO:0006744 ubiquinone biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0048039 ubiquinone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-263 Predicted to enable ubiquinone binding activity. Predicted to be involved in cellular respiration and ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Orthologous to human COQ10B (coenzyme Q10B).

Ensembl:

ensembl_id ENSDARG00000056141

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073305 False 1177 mRNA 0.46 6 32178050 32187086
TCONS_00073306 False 2317 mRNA 0.44 5 32178374 32188445
TCONS_00073307 True 513 processed_transcript 0.49 4 32184055 32187252

Neighbor

gene id symbol gene type direction distance location
XLOC_037246 pikfyve coding upstream 72016 32073606 ~ 32106034 (+)
XLOC_037245 si:dkey-83m22.7 coding upstream 106620 32069957 ~ 32071430 (+)
XLOC_037244 BX470263.1 coding upstream 184617 31993311 ~ 31993433 (+)
XLOC_037243 NA coding upstream 263588 31913496 ~ 31914462 (+)
XLOC_037242 itgbl1 coding upstream 344485 31752628 ~ 31833565 (+)
XLOC_037248 BX530407.4 coding downstream 694 32189139 ~ 32192519 (+)
XLOC_037249 NA coding downstream 35250 32223695 ~ 32238109 (+)
XLOC_037250 hspe1 coding downstream 112572 32301017 ~ 32305007 (+)
XLOC_037251 mob4 coding downstream 118417 32306862 ~ 32312862 (+)
XLOC_037252 NA coding downstream 156438 32344883 ~ 32349025 (+)
XLOC_037239 BX571700.1 non-coding upstream 682285 31495648 ~ 31495765 (+)
XLOC_037238 NA non-coding upstream 749316 31347037 ~ 31428734 (+)
XLOC_037237 NA non-coding upstream 835441 31280401 ~ 31342609 (+)
XLOC_037254 NA non-coding downstream 348301 32536746 ~ 32537384 (+)
XLOC_037257 NA non-coding downstream 703452 32891897 ~ 32895100 (+)

Expression


Co-expression Network