XLOC_037255 (rabl3)


Basic Information

Item Value
gene id XLOC_037255
gene name rabl3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32635546 ~ 32670526 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073320
GTAATATTAGCGGCAGAAAATATTAGTAGTAACAGTAGAAGTATTCAAAGAAGAAACCTAAAGCAGGAACTTCAAAAACCAACATTCAAACATTCAACTGatgaaaaagacacctcATATACAGTCATGCTTCTAAAACTAGATTCATCATtaataaacaaattttcaaTGACTCTTTCACATCCCAGAAAACAAGAGAAATCCCCAAACAATGAGTGCAGTGTGGCAGATTGGTCAGAGAAGCACACTAGAGAAaacaaaccatcgttGGTACTCCTTGAATATATTGTGAGCTCCCAGAACAATTTagagtgtaaGAGGAAAGTACAACAGCATTTTAAt
>TCONS_00073321
ATTTTGTCATGCACGTAACGTTAAGTTTACACTTCCGTATAGAAATGGCATCTTTGGACAGGGTGAAAGTGCTGGTTTTGGGAGATTCTGGAGTAGGGAAGTCCTCTCTTGTACACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTATCATTTTAGTTCACGATCTGACTAACAAGAAGTCCTCCCAGAATCTATACCGCTGGTCACTAGAGGCACTGAGCAAGGACTCCTCTCCAACTGGCATCATCGTATCCAACGGTGATTACGATAGAGAACAGTTTGCAGAGAACGCTGTTCCACTTCTGCTAATTGGCACCAAATTTGATCAGATCCCAGAAAACAAGAGGAACGATGTCCTGACCCGAACTGCCTTTCTATCTGAAGACTTCAACGCGGAAGAGATCAACCTGGTGTGTGCTTTTTAGTGCTCTCAGAATCTAAGCTTTATCTAAACTAATATCATAACATGGATTAAAACTTGTCCTTTTAAgagtt
>TCONS_00073322
ATTTTGTCATGCACGTAACGTTAAGTTTACACTTCCGTATAGAAATGGCATCTTTGGACAGGGTGAAAGTGCTGGTTTTGGGAGATTCTGGAGTAGGGAAGTCCTCTCTTGTACACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTATCATTTTAGTTCACGATCTGACTAACAAGAAGTCCTCCCAGAATCTATACCGCTGGTCACTAGAGGCACTGAGCAAGGACTCCTCTCCAACTGGCATCATCGTATCCAACGGATCCCAGAAAACAAGAGGAACGATGTCCTGACCCGAACTGCCTTTCTATCTGAAGACTTCAACGCGGAAGAGATCAACCTGgaTTGTACAAATCCACGGTATCTTGCTGCTGGTTCATCAAATGCTGTTAAATTGAGTCGATTCTTTGATAAGGTAATAGAGAAAAGATACTTTACAAGAGACCCTAGCCAGATGCAGAGCTTCACAGACAGGAGGCGCTTTAATTTCAAGAGTCTGCACAGTGATTGAGTGTACACATTTAATTTTGGTTGGTGGGTTAAATTCTGTTGGTAATCTGAAATAGCATATAAATATTTCTttcttattatgttattttacagataGGGCGATCAGTTTAACGTTAACTGGTTtacaatgacaaaaatatttgtttggtttttaaaatcaCTTGTATCTCATtttctgagattttttttatacTAAAGGTTAAAAAATATGAACTCAAGGTTCTATCACAGTTTAAAATCT
>TCONS_00073323
ACGTAACGTTAAGTTTACACTTCCGTATAGAAATGGCATCTTTGGACAGGGTGAAAGTGCTGGTTTTGGGAGATTCTGGAGTAGGGAAGTCCTCTCTTGTACACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTATCATTTTAGTTCACGATCTGACTAACAAGAAGTCCTCCCAGAATCTATACCGCTGGTCACTAGAGGCACTGAGCAAGGACTCCTCTCCAACTGGCATCATCGTATCCAACGGTGATTACGATAGAGAACAGTTTGCAGAGAACGCTGTTCCACTTCTGCTAATTGGCACCAAATTTGATCAGATCCCAGAAAACAAGAGGAACGATGTCCTGACCCGAACTGCCTTTCTATCTGAAGACTTCAACGCGGAAGAGATCAACCTGgaTTGTACAAATCCACGGTATCTTGCTGCTGGTTCATCAAATGCTGTTAAATTGAGTCGATTCTTTGATAAGGTAATAGAGAAAAGATACTTTACAAGAGACCCTAGCCAGATGCAGAGCTTCACAGACAGGAGGCGCTTTAATTTCAAGAGTCTGCACAGTGATTGAGTGTACACATTTAATTTTGGTTGGTGGGTTAAATTCTGTTGGTAATCTGAAATAGCATATAAATATTTCTttcttattatgttattttacagataGGGCGATCAGTTTAACGTTAACTGGTTtacaatgacaaaaatatttgtttggtttttaaaatcaCTTGTATCTCATtttctgagattttttttatacTAAAGGTTAAAAAATATGAACTCAAGGTTCTATCACAGTTTAAAATCTACAATTAGCAAACCTAGAGATATCCTGCATCACAATAACACTACATTGGAACATACCTATTTACTGTACTTCTCGTGTTTACTGCTTGTACTGAGGTGACAGGGaccctgttttttttctttggtaaAGGTAATCAAAACAGTTTATCTGTCATAGAGTCATTCAGGAAAGATGGCATCTAAAAGAAGGAAATCATATTGtcattaattaaaagtttttgtCATCATTCtttgtaatataaaaataattaaagtacaGGACTTTGCTATATTAGCAAGCTGTTAATACTGTGCATGTACAGAACTCTTTACATAAGACAAAAGTATATAAAGATACATTCGAATAAA
>TCONS_00073324
AAATGGCATCTTTGGACAGGGTGAAAGTGCTGGTTTTGGGAGATTCTGGAGTAGGGAAGTCCTCTCTTGTACACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTATCATTTTAGTTCACGATCTGACTAACAAGAAGTCCTCCCAGAATCTATACCGCTGGTCACTAGAGGCACTGAGCAAGGACTCCTCTCCAACTGGCATCATCGTATCCAACGGTGATTACGATAGAGAACAGTTTGCAGAGAACGCTGTTCCACTTCTGCTAATTGGCACCAAATTTGATCAGATCCCAGAAAACAAGAGGAACGATGTCCTGACCCGAACTGCCTTTCTATCTGAAGACTTCAACGCGGAAGAGATCAACCTGgaTTGTACAAATCCACGGTATCTTGCTGCTGGTTCATCAAATGCTGTTAAATTGAGTCGATTCTTTGATAAGGTAATAGAGAAAAGATACTTTACAAGAGACCCTAGCCAGATGCAGAGCTTCACAGACAGGAGGCGCTTTAATTTCAAGAGTCTGCACAGTGATTGAGTGTACACATTTAATTTTGGTTGGTGGGTTAAATTCTGTTGGTAATCTGAAATAGCATATAAATATTTCTttcttattatgttattttacagataGGGCGATCAGTTTAACGTTAACTGGTTtacaatgacaaaaatatttgtttggtttttaaaatcaCTTGTATCTCATtttctgagattttttttatacTAAAGGTTAAAAAATATGAACTCAAGGTTCTATCACAGTTTAAAATCTACAATTAGCAAACCTAGAGATATCCTGCATCACAATAACACTACATTGGAACATACCTATTTACTGTACTTCTCGTGTTTACTGCTTGTACTGAGGTGACAGGGaccctgttttttttctttggtaaAGGTAATCAAAACAGTTTATCTGTCATAGAGTCATTCAGGAAAGATGGCATCTAAAAGAAGGAAATCATATCtttgtaatataaaaataattaaagtacaGGACTTTGCTATATTAGCAAGCTGTTAATACTGTGCATGTACAGAACTCTTTACATAAGACAAAAGTATATAAAGATACATTCGAAT
>TCONS_00073325
CACCTTCTTTGCCAGAATCAGGTTTTGGGGAATCCCTCATGGACTGTGGGCTGCTCAGTGGACGTCAGGGTTCATGACTACAGAGAAGGCACTCCAGAAGAGAAGGCTTTCTACATTGAACTCTGGGATGTTGGAGGATCTGTTGGCAGTGCCAGCAGTGTTAAAAGCACCAGAGCTGTGTTTTACAATTCAGTTAATGGTTAAGTATTAGtgttcccctttgaacacaatatattttattacgagaaacttttaaaatatattgttacaGTAAacttgtcaggctaaataattcaaatgaatcttggacttctgctgtcttcattagtttcaaaaacacagatttgattacaatttaaaacggcatcatttgagatcttttctgctggagatactgttgtcctaaaaaaattaaaacgaaaataaaacatcttaaatatacaataggaacggtatagcagaaaattagggtggttttaaaaccgcgacttttccaaaccacagtataccttgaaaa

Function

symbol description
rabl3 Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0001779 natural killer cell differentiation biological_process
GO:0030183 B cell differentiation biological_process
GO:0006508 proteolysis biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0012505 endomembrane system cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040808-11 Predicted to enable GTP binding activity; GTPase activity; and protein homodimerization activity. Predicted to be involved in several processes, including lymphocyte differentiation; regulation of Ras protein signal transduction; and regulation of protein lipidation. Predicted to act upstream of or within proteolysis. Predicted to be active in endomembrane system. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human RABL3 (RAB, member of RAS oncogene family like 3).

Ensembl:

ensembl_id ENSDARG00000040959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073320 False 342 mRNA 0.35 19 32635546 32670526
TCONS_00073321 False 663 lncRNA 0.44 5 32649076 32651437
TCONS_00073322 False 916 nonsense_mediated_decay 0.40 8 32649076 32652072
TCONS_00073323 False 1321 mRNA 0.38 8 32649088 32652419
TCONS_00073324 False 1258 mRNA 0.39 9 32649118 32652416
TCONS_00073325 True 517 lncRNA 0.37 2 32649507 32650104

Neighbor

gene id symbol gene type direction distance location
XLOC_037254 NA coding upstream 98162 32536746 ~ 32537384 (+)
XLOC_037253 plcl1 coding upstream 178212 32358514 ~ 32457334 (+)
XLOC_037252 NA coding upstream 286521 32344883 ~ 32349025 (+)
XLOC_037251 mob4 coding upstream 322684 32306862 ~ 32312862 (+)
XLOC_037250 hspe1 coding upstream 330539 32301017 ~ 32305007 (+)
XLOC_037256 ankrd50l coding downstream 189441 32859967 ~ 32875568 (+)
XLOC_037257 NA coding downstream 221371 32891897 ~ 32895100 (+)
XLOC_037258 cnga4 coding downstream 260096 32930622 ~ 32946439 (+)
XLOC_037259 nhlh2 coding downstream 307776 32978302 ~ 32981660 (+)
XLOC_037260 vangl1 coding downstream 338758 33009284 ~ 33055440 (+)
XLOC_037249 NA non-coding upstream 397437 32223695 ~ 32238109 (+)
XLOC_037248 BX530407.4 non-coding upstream 443027 32189139 ~ 32192519 (+)
XLOC_037244 BX470263.1 non-coding upstream 642113 31993311 ~ 31993433 (+)
XLOC_037261 BX511259.1 non-coding downstream 404154 33074680 ~ 33082181 (+)
XLOC_037270 BX545856.2 non-coding downstream 573672 33244198 ~ 33245755 (+)
XLOC_037276 NA non-coding downstream 1056157 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 1326616 33997142 ~ 34008566 (+)

Expression


Co-expression Network