XLOC_037262 (atp5po)


Basic Information

Item Value
gene id XLOC_037262
gene name atp5po
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33145522 ~ 33148873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073334
TGCGTATTTCATCCCAGACCAGTACGCATGCGCAGTTCTTTTGACCTACACAGTCGCAGGAGAAAATGGCAGCGCTTGGAGTGGGGCTGCAGGTGCGTCAGTTCAGCACCTCAGTGATCCGACCAGCAGCAAAACTCATCAAGCCCCCTATCCAGGTCTATGGGGTCGAGGGACGCTACGCTACTGCCCTGTTCTCTGCTGCCAGCAAGCAGAAGAGCCTCGACAAGGTGGAACAGGAACTTGGACGTGTGTCTAGCCTAATTAAGGACCCTAAGCTGTCAGGTATTGTGATGAACCCCCATGTCAAGCGCTCTGTCAAGCAAAAGACTTTTGTGGACGCCTTGACCAAGGCTAAAGTCTCCCCCATAACCATCAACCTCATCAATGTCCTATCAGAAAATGGCCGCTTGACCTTGACCCCTGATGTCATCGCTGCTTTTAGCAAAATGATGAGCGCCCACAGAGGAGAGGTCACATGCTCAGTCACCACCGCTCAGCCTCTGGATGAAGCTAGTCTTGCAGAGCTGAAAGTGGCACTGAATGGTTTCCTTGCAAAGGGAGAGACCATCAAGCTTGAGACCAagTCTGATGCCTCAATCCTTGGTGGTATGATCGTGAGCATCGGTGATAAGTATGTGGACATGTCCACTAAGACAAAGATCCAAAAGCTCACCAAGCTGATCAGGGATACCTAAGTCCTGTGGACTAACCAGACCTAATCAAATCAACATTCAGGAGGTGAAGAACGAACAACCTCTCTGCTATTGTGTAGATGAATGACTTTGTCCAGTTGTGTTCCTAATAAATAttatgtaacatttaaaatgca
>TCONS_00073335
AAATGGCAGCGCTTGGAGTGGGGCTGCAGGTATGACTTTCTGAAAACCTTGTACTCGCTTTATAGAAAATCAACAAATGTGTGCCTTTTTATTCATAACACTATGTAAACAGTAAGAATTGTAAATATTTGAGTGGTTGGAACGAACGTGATATGTCTGGAAACTGAGCGAGGCCTTGACAGGCAGTGTCGAATCCGCAACAGACAGTCATTCAAACCGTGCGCTCTTGTAGTTCGTTACATAGTAAATAATGTTAATTTGCGTATCACCCTTTCAATTGAAAgcctttatttacttgtttgtaaaGTACAATGATCACCAAATGAGTTTTTGCTTCTCAATGCTCAATCTGGAGTATGCAGCGCTCAAAATGTGACTGAACATGCGTTTTAAACTCTCTAACGTTATATCATGCAGTGTAGTGGCTTTTGTGACGCAGTGAGTCATGGACCATATATCTATATTCATGATTTTACAGTTTGCAATACTTGATAAATCTGCAAATAATTGTTTTCCTCTTCCTGCAGGTGCGTCAGTTCAGCACCTCAGTGATCCGACCAGCAGCAAAACTCATCAAGCCCCCTATCCAGGTCTATGGGGTCGAGGGACGCTACGCTACTGCCCTGTTCTCTGCTGCCAGCAAGCAGAAGAGCCTCGACAAGGTGGAACAGGAACTTGGACGTGTGTCTAGCCTAATTAAGGACCCTAAGCTGTCAGGTATTGTGATGAACCCCCATGTCAAGCG
>TCONS_00073336
CTTGATAAATCTGCAAATAATTGTTTTCCTCTTCCTGCAGGTGCGTCAGTTCAGCACCTCAGTGATCCGACCAGCAGCAAAACTCATCAAGCCCCCTATCCAGGTCTATGGGGTCGAGGGACGCTACGCTACTGCCCTGTTCTCTGCTGCCAGCAAGCAGAAGAGCCTCGACAAGGTGGAACAGGAACTTGGACGTGTGTCTAGCCTAATTAAGGACCCTAAGCTGTCAGGTATTGTGATGAACCCCCATGTCAAGCGCTCTGTCAAGCAAAAGACTTTTGTGGACGCCTTGACCAAGGCTAAAGTCTCCCCCATAACCATCAACCTCATCAATGTCCTATCAGAAAATGGCCGCTTGACCTTGACCCCTGATGTCATCGCTGCTTTTAGCAAAATGATGAGCGCCCACAGAGGAGAGGTCACATGCTCAGTCACCACCGCTCAGCCTCTGGATGAAGCTAGTCTTGCAGAGCTGAAAGTGGCACTGAATGGTTTCCTTGCAAAGGGAGAGACCATCAAGCTTGAGACCAaggtatgtttattttttccacaggGTGGTCTTTTTGTCTTCTTTCTCtaatcattttaaacatgttcagtttttaaaaagcagaa

Function

symbol description
atp5po Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase, stator stalk and proton-transporting ATP synthase complex, catalytic core F(1). Is expressed in several structures, including alar plate midbrain region; gut; optic tectum; optic vesicle; and retina. Orthologous to human ATP5PO (ATP synthase peripheral stalk subunit OSCP).

GO:

id name namespace
GO:0042776 mitochondrial ATP synthesis coupled proton transport biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-147 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Predicted to be located in membrane. Predicted to be part of mitochondrial proton-transporting ATP synthase, stator stalk and proton-transporting ATP synthase complex, catalytic core F(1). Is expressed in several structures, including alar plate midbrain region; gut; optic tectum; optic vesicle; and retina. Orthologous to human ATP5PO (ATP synthase peripheral stalk subunit OSCP).

Ensembl:

ensembl_id ENSDARG00000001788

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073334 False 829 mRNA 0.49 7 33145522 33148873
TCONS_00073335 False 745 lncRNA 0.43 3 33145585 33147007
TCONS_00073336 True 615 lncRNA 0.48 5 33146072 33147664

Neighbor

gene id symbol gene type direction distance location
XLOC_037261 BX511259.1 coding upstream 63341 33074680 ~ 33082181 (+)
XLOC_037260 vangl1 coding upstream 90082 33009284 ~ 33055440 (+)
XLOC_037259 nhlh2 coding upstream 163862 32978302 ~ 32981660 (+)
XLOC_037258 cnga4 coding upstream 199083 32930622 ~ 32946439 (+)
XLOC_037257 NA coding upstream 250422 32891897 ~ 32895100 (+)
XLOC_037263 dop1b coding downstream 5968 33154841 ~ 33169215 (+)
XLOC_037264 dop1b coding downstream 25191 33174064 ~ 33195586 (+)
XLOC_037265 si:ch211-125e6.11 coding downstream 58701 33207574 ~ 33209659 (+)
XLOC_037266 si:ch211-125e6.12 coding downstream 68072 33216945 ~ 33218269 (+)
XLOC_037267 si:ch211-125e6.13 coding downstream 71469 33220342 ~ 33221670 (+)
XLOC_037254 NA non-coding upstream 608138 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 796497 32344883 ~ 32349025 (+)
XLOC_037249 NA non-coding upstream 907413 32223695 ~ 32238109 (+)
XLOC_037270 BX545856.2 non-coding downstream 95325 33244198 ~ 33245755 (+)
XLOC_037276 NA non-coding downstream 577810 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 848269 33997142 ~ 34008566 (+)
XLOC_037285 NA non-coding downstream 1137881 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 1221987 34370860 ~ 34378332 (+)

Expression


Co-expression Network