XLOC_037263 (dop1b)


Basic Information

Item Value
gene id XLOC_037263
gene name dop1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33154841 ~ 33169215 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073337
TTTAAAACTGTcgatttgtttaaattcatatgGTTATTTGGCACGAGATCCAGTGATCTGTCGACCATCCTGTTTTGCTGCAGTGGACAGATGCTGAGCATGCTGGGACATGACTGAGGCGTGATGGATCCAGAAGAAGCCGAGCTTCAGAATGACTACCGTTACCGAAGTTATGCAGCTGTCATTGAGAAGGCGCTGCGAAACTTTGAGTCATCTAGTGAATGGGCCGATCTCATCTCCTCACTGGGAAAACTCAACAAGGCTCTCCAGAGTAATCTAAAGTACTCTCTGTTACCGCGCCGGCTGATCATCGGGAAGCGTCTTGCTCAGTGTTTGCATCCTGCCCTGCCCAGCGGCGTCCATCTCAAAGCACTTGAGACCTATGAGGTCATCTTTAAAATCATTGGCACAAAATGGCTTGCGAAGGATCTCTTTATATACAGCTCAGGCCTGTTCCCATTGCTGGGTCATGCAGCGATGTCTGTGAAACCCGTCCTCTTGACTCTGTACGAGAGGTACTTCCTGCCCCTTCAGAGGGCACTGCTACCCAGCCTGCAGGCCTTTATTATGGGCTTGCTGCCTGGACTGGAGGAGGGAGCGGAGGTCTATGACAGGACGGATGCGTTGCTTGTGAAGCTGTCAGTGTTGGTGGGTCAGTCTGTGTTTTATGGGGCGCTGTGGGGTTCAGTGCTGATTTGTCCTCTGGTGCGGCTGCCAGCTTCACTCTTCATCGTTGCACATTTCGACCACTCAATCACAGCTAAAGAACAGAAATTTATGCTTGGGACAGATCACAGACTAGTGGTGAAAGCTGTTTGTCTTGCTTTACAAGACTCTAATGTTCTGGTCCAGAGGAACACGCTGGAAATTCTTCTCTACTTCTTCCCCTTCACGACCTTCCAGGATCCTGGCGAGTGTGcaattccattaaaacaagaTGAGATGATCAGTGTTGTGTCTGCTGCCTCGCTCACACTGCTCAGGAGAGACATGTCTCTCAACCGCCGCCTCTATGCATGGATGCTTGGCTTGGACATTAAAGGAGGAATGGGGGCTGCAGACTCCAGTCACTACAGCACTGTGGAGGAATACACTGCATTCTACTTCAATACACACTCCAGAGAATTATTGGTGCAGGCTCTGGTGAATATTCTGAAGCAGAAAGATATCGAGGCCAACCCTGACAACCTGATAGATTATCTCAGGCCGTTTCGCATCATCATTAGCCTGCTGGACAAATCAGAGATAGGGCCCTTGGTGTTGTCTGATGTGTTGCTGGAGGTGGTCAGAGCattttacagctactgtatagcGATGCTGGGAGACAACGGTAACAACACCAGCCTCACTGGCAGCCAACTCAACAGTAAAATCAAGGAGAATAAGAACTCCTCTGAGATAATAAAGACCGTCAATATGCTTGTGAGTGCCATGAGCAGTAATTTTCTCTGGGACTACATGACAAGGCACTTCCAAATCTGTCTCAGctcacTGAGAGATCCAGTTGAAAAGAGTCCATCTAAATCCTGGAGCAGCCCTCCTTCAGTGACTGAACTCTCCACGCTTATTATCTTCTTGCTGGATGTTATTCCTTTGgaaCTCTACGCAGAGATTCAAACACAATACCTGCCACAGATGTTGGGCAACATGTTGCAGTCGCTACAAAGTCACATGACTTCTCTCAGCTTATCAGAACTCACGCAGGCCATGAGGGCGTGTTTTAAAGTGCTCAGTAAGATACAGATGCCG
>TCONS_00073338
ATGGATCCAGAAGAAGCCGAGCTTCAGAATGACTACCGTTACCGAAGTTATGCAGCTGTCATTGAGAAGGCGCTGCGAAACTTTGAGTCATCTAGTGAATGGGCCGATCTCATCTCCTCACTGGGAAAACTCAACAAGGCTCTCCAGAGTAATCTAAAGTACTCTCTGTTACCGCGCCGGCTGATCATCGGGAAGCGTCTTGCTCAGTGTTTGCATCCTGCCCTGCCCAGCGGCGTCCATCTCAAAGCACTTGAGACCTATGAGGTCATCTTTAAAATCATTGGCACAAAATGGCTTGCGAAGGATCTCTTTATATACAGCTCAGGCCTGTTCCCATTGCTGGGTCATGCAGCGATGTCTGTGAAACCCGTCCTCTTGACTCTGTACGAGAGGTACTTCCTGCCCCTTCAGAGGGCACTGCTACCCAGCCTGCAGGCCTTTATTATGGGCTTGCTGCCTGGACTGGAGGAGGGAGCGGAGGTCTATGACAGGTGGGACTTAAAATTtgcatga

Function

symbol description
dop1b Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B).

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1195 Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B).

Ensembl:

ensembl_id ENSDARG00000055857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073337 False 1749 mRNA 0.48 13 33154841 33169215
TCONS_00073338 True 513 mRNA 0.51 3 33158191 33162205

Neighbor

gene id symbol gene type direction distance location
XLOC_037262 atp5po coding upstream 5968 33145522 ~ 33148873 (+)
XLOC_037261 BX511259.1 coding upstream 72660 33074680 ~ 33082181 (+)
XLOC_037260 vangl1 coding upstream 99401 33009284 ~ 33055440 (+)
XLOC_037259 nhlh2 coding upstream 173181 32978302 ~ 32981660 (+)
XLOC_037258 cnga4 coding upstream 208402 32930622 ~ 32946439 (+)
XLOC_037264 dop1b coding downstream 4849 33174064 ~ 33195586 (+)
XLOC_037265 si:ch211-125e6.11 coding downstream 38359 33207574 ~ 33209659 (+)
XLOC_037266 si:ch211-125e6.12 coding downstream 47730 33216945 ~ 33218269 (+)
XLOC_037267 si:ch211-125e6.13 coding downstream 51127 33220342 ~ 33221670 (+)
XLOC_037268 si:ch211-125e6.14 coding downstream 53696 33222911 ~ 33223829 (+)
XLOC_037257 NA non-coding upstream 259741 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 617457 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 805816 32344883 ~ 32349025 (+)
XLOC_037249 NA non-coding upstream 916732 32223695 ~ 32238109 (+)
XLOC_037270 BX545856.2 non-coding downstream 74983 33244198 ~ 33245755 (+)
XLOC_037276 NA non-coding downstream 557468 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 827927 33997142 ~ 34008566 (+)
XLOC_037285 NA non-coding downstream 1117539 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 1201645 34370860 ~ 34378332 (+)

Expression


Co-expression Network