XLOC_037264 (dop1b)


Basic Information

Item Value
gene id XLOC_037264
gene name dop1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33174064 ~ 33195586 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073339
GTCCAACATACTGCCATCTCCTCTTTGCTAGAGATGATCAACCACTCTCAGTCTTTAGCACTCGTCATTCACGATAAAAACCAGCGTTATAAGAACTCTGATGCAAACCCACTCAGCGGACAACTGCAGATGGTCACCCTTCCTCCAGTCTACCCTGTGGTTCTCAAAACTCTGGAGGACTCCACAGACTTCTATTTGCGTGTATCTCAGGTGTTGTGGGCTCAGTTAGACACTGAGCGTAAAGAGCATCATGTATCTTGTGTAGAGCTTTTCTATCGACTTCACTGCTTGGCTCCATCTGCATCAATCTGTGAGGACATCATCTGCTTGGGTTTACTGAGCGGGGACAAGgtTGTATGTCTGGAGGCGCTCCACAGGTTTTCTGTCTTGTGGCACCTGACACGAGAAATCCAGACCAGTCGTAGCACCTCTCTCAACCGCTCATTTGACAGGTCTTTGTTTGTGGTATTAGATAGCTTGAACAATCAGGATGGTAGTGTTCGTGCTGCAGCACAGAACTGGCTAGTTCGAGCTCTCTCTCTCAGTGATGTAGTCCGTATCTTGGAACCAGTGCTGCTCTTACTGTTGGACCCGAAAACACAGAGATCACCCATACAAAGCATCAAACAGAATCTTTCTGCTGGTAATGTAAAGGCACTGATCTGGCGAGACCGATCCATCCCAAAAAGTGCTGGAGACAGCATGACACCTGGTTGCCAAACAGAAGAAAGCTTTGTGAATCGCATAACCATAGTAGATCGTGAAGCACTGTGGGCTGAGTTGGAGCGAGACCCAGAATTAACACCCCCGGATTCGCCAACAATATCCCAGAGTGAGAGTGATGAGACAGAGGGGGAGGATGAAGAAGTAGAGGAAGAAGAGGAAAGTGaacacacagaatctgcagacacCAGCGGAGCTCAGAACTCCACTGAAAACTCCAGCTCAAGCTCCGCCCCTTACTTACAGCGGCATGAGGATGGCAGTGTGGAAGAGGATGCTGTTCCCAATGGCTTGCAGAGGGTGGATTCAGAACGTACACAGGTTTCCGATTCGCTCTCTAGTGATGAAGATGATGGGCAGTTAGAAGCCATGGCCAAGACCCGGCAGCTGAAACGACAGCGGGAGAAACGTGAGGCGGTGGATTCACTCTTCCGCCATGTTCTGCTCTATAAGCAGAAGTACGAGAGCAGCCAGATTCTGTACGCCTTCACTATTTTAGAGACCATTCTCCGAACAAGTGCAGGGCCGTTTGTGGAGGCTCTCTCCAGTACTTCTCTGGACTGCAGTTCTATTGCTCATCTCAACCTCATCCAGAACCTTCTGCAGAGGCACCGTCAGGCGCAGGATGGTGGCAGCTTCTATGGGCAATTGCAGAACTCAACTCCACCAAGTGGAGGCACTCCTGATGCATCCCAGCCTGCCTCTTCTCCTCTCCATTCACCTTCTTGTCCCCCAACTCTCCTCCTAGAGCTGCTTACCAGCCTTTGCATGCGCTACCTCCGCTCTCACTATCCCTCATATGCTAGTGTTCCCACTCGCCAACTCCAAGCCAATCGAGAGGTGCAGGTAAAAAGTGTGGAAGTGCTGACAGAGTTGATGATCCAGTTGGTGAGGGTGGCCCAGCAAAATGGAGACACGAAGGGAACCGCTGGTCTGGAAGCTGTGCGCAACCTTCTTTGGGGATACAAGGTGCAGCAGTACGTCCTTCTAACACTTTCCGCCTCCATGTATGTCTGCCAGAGAGTAGATCGACCTGACCAGCACACGTTGCCAGAAGAAGACCAAGGAGAAGACGGTGGAGAGATCTCAGAGGAGAGCCTTATCAATTTTGGCCGTGATGGGACCTGGGCTGAGCACCCGCTCCAAATTGCCCTACTGAAGCTTCTAAAGGTTCTTATAGTATTGGAGCACCACGTGTGCCCGCCACATACCAAGCCACAAGAACACGATCAAGGCCAGTCTAACCCACAGCGTCGAGCAGAACCACCGTCCTCTGCTTTGGCACGAGAGTGGCAAACAGCTGTGATGTTCCAGCAGTCCATAAAAGCAGTGCGTTATGTATCCAGTCAGCCTATCACTGCTCAGGGCATGTTTGTGTCGGCAGCAGCCCGGGCTTTGCACCCACAGTATGGCTGTGCCATGCATCCTGCCTGGGTCACCCTGCTGTGTGATGTTCTGCCATATTTAGGACGCTCACTGGCCATCATTGTATCACCGATAATTGCCCAGATCTGCAGGAACCTGGATGAGCTTGTTAAACAGCACGAGCACGATGGAATCAAGGGTTCACACAACGGTACCTTAAAGAGGGAGAACATTGCACCTGACTATCCTCTGACGCTGCTGGAGGGGCTGACCACTATAACACACTACTGTCTGCTGGACCACAAGAAAGCAACTGCAGGCTGTGATGTTCCAGACCTGCGAAATGCCAGCAATGCCATTCTGGAGGAGTTTCCACATATGATTAGCAGTATGGCCTTACTCTGGGGTGTGGTCAAGGGCTGTGACTCCACCCATGGTAGCAGAGCCACACCTACTTCTGTGTACTTTAAAAGCACAAAGATCCTGCGGCAAAAGGTTCTGGAGTTCTTAATGCCATTGACCCAGCAGTTTGGTGTGCAGGTCATGGCATCTGTGGCTGCTGTGTGGAATAGCAGGAAAAGCCGCAAAAGACGTTCCAGAAACAAGATTTTGCCAGATGCTAGTGATTCACAGATGACTCTAGTGGATCTAGTGAAGGCATTAAACACACTCCGTACAGACACCATACTGCAGCTCATCAGAGAGGTGGTGAAGAAACCTCATCAGATCAAAGGAGACCAGAAGTCTACTTTAGTGGACATTCCAATGCTGCAGTTCAGCTACGTCTACATTCAAAGTCTCACCGCTCAAGCTCTTCAGGAGAACATCAATCCTCTCCTCTGTCTGCTGAGAGAATCTGTTCAGCTTAACCTCGCCCCACCTGGACACTTCTTACTCCTTGgCATCCTTAATGACTGTGTAAACAGACTTCCCAATATCGACAACAAGAGGGATACCAAAGAACTGCAGGAAGTGAGTCAGCGTATACTGGAAGCGGTGGGAGCTGTGGCCGGCTCGTCTCTCGAGCAGACCAGCTGGCTGAGTAGAAACCTGGAGGTTAAAGCACAGCCTCAAGTCTGTCTTCAGGGAGATGAAGATGACCATGACGCCAAtgagtttgaagAGTATGCAGGTCAGGGCAGTACTATGGTATCGTCTTCAGCACCATCTGTATTCAGTGTACAAGCTCTGGTTCTGCTGGCTGAGGTTCTGGCTCCACTTTTGGACATGGTCTATCGCAGCGACGAGAAGGAGAAAGCTGTGCCTCTCATTTCACGTCTAATGTATTATGTTTTTCCCTATCTAAAAAATCACAGTGCCTATAACATGCCTAGTTTCTGTGCGGGTGCTCAGTTGTTGAGCAGTCTGAGTGGATATGCCTACACTAAGCGAGCATGGAAGAAAGAGGTGCTGGAGCTTTTCATGGACCCTCTGTTTTTTACAATGGAGTCTTCATGTTCCTACCACTGGAGATCCATTATAGACCATCTTCTGACTCATGAGAAAACCATGTTCAAAGACTTGATGAGTATGCAGAGCAGTTCTTTAAAACTCTTCAACAGCGCTGAGCAGAAGCCCATGTTACTGAAACGACAGGCTTTTGCCATGTTTAGTGGAGAAAATGACCAGTACCACTTCTATTTGCCTCTAATTCAAGAGCGTCTGACAGAGAACCTGCGTGTAGGACAGAGCCCATCAGTGTCAGCTCAGATGTTTCTCATGTTTCGTGTTCTCCTTTTGAGGATCTCACCACAACATCTCACCTCCCTCTGGCCAATCATGGTGACTGAGCTGATACGCATCTTTAACCGACTTGAAAAGGCACTGCTGGATGATAAAGAAGTTACAAAGAGTAAATTGCGGGGTGGCCACGACAAGAATGGTCTACTGTGTTTCCCTCAGGCCGAGCTGGACATGTACTTGTCAGCCTGCAAGTTCTTGGACACCGCAGTGTCTTTCCCTCCTGACCACATGCCTCTGTTTCAAATGTATCGCTGGGCTTTCATTCCTGAAGTAGATGTTGACCATTATGACGGACCAGGAAACACTCTGCTGGAAGGCGAACAAGAGTGTAAACCTCATATTGTCAGGATACTGGATGGAATAAACCGACGCTATGGGGAGCTGAATGGAACAGCAGCGGAGTCTAGTACAGATCGAGTGGAGTTTCCTTTGCTCACGCTGCGCTCTCTCTACTCAATTGTGGATCTGGTGCCGTTCTTCAACACCCTCTGCTGCTCTTTTAATGGCTCCTCCTCTGCACACCTCTCTCATTATGCCGCTGATTACCCGCCGTCCAGCAGTGATCAAGTCATGAAGCGCCTGGAGCACATCACCGAAGGAGAGTTCCTAGATGGAATGGACAGTTAAATGAGAAATCCCATCCCTAAGCCTTTTACTCAAAGTCTgtatttccttttgtattttatgtaatCAGTTTCTCTTCATTGTTAAAGGTGCAATGAGCTTTCATTGTAGCATAGTAGTTTACATGAAATGTTTAAAGGACCCTGATCAGTTTCTTAAGATCTTAATCGATGCACGTCAAGTTGTTAAAGGTCTCTTAAACTTTATGACTATTCTAAGTCGTACATGCTGTGAATGTATAtcatttttgtgtttaaattgGGCTTAATGTGGGCTTTGCATTCATTCTGTGCACATTCCATTGATGTTTGTTAGTGATTGAGCCaaattaaagattatttggtCATTAAGGAAATGTATTAATTGATTGGTCCATGGCATTTATTTCAGTTGTATCCTAGACTATCAGTCATTTCTCAAACTGAAATCCAATTGCAGTGTTTTTtcctgaactgttttttttttcgtcttcATGGAAGTCTCATCTATCTGTTGGAAAATATTGACAATGTCATTTGTTTGCCTGCCAGTATCCGTTGCTTTCTGAATGTCTTTTATTCAGCTGTATTTCCTCTCCCACTTTAAATTAAggaaaatacatgtttatttttatttggataTTGAATGTCTATGTAGAATAAATATTCTGTTAATATTTACAGCAGAGGAATTGTAATGCACTTTTTTCTGTACCCAAGGGAATTGTTTTCATCCATGTCTGTGTGTGACCTTAAGGACGTTTTTAGGTTGTCGCTTTAATTTTAGCATGCAGAACCTGATTCAGCAATCTCAAATGCTACTTGCTAGAATATCTTGCCCTTTTATTGAAGTGCCTCAAAACAAATGCTCTAGTTAAGGAACAGTTTTACCTGTTCTGTAGTTGTAGTTGAAGAAAACGGCAAACGAGAAGCTAATATTTCCAGTAATCATTATTCCTCAAGTGAAAACACAAAAACGTCCACATCTTCACTCCATGTTGTTTATTCTCTGgaatgtattcattttaaattgtagtttttaaTTTATCTTAATGCTTATTAAAGTGAattatttcaagcaaatattCTGCAGATCTGAATAAAATTGCTCAGAACCAGA
>TCONS_00073340
ATGGTCACCCTTCCTCCAGTCTACCCTGTGGTTCTCAAAACTCTGGAGGACTCCACAGACTTCTATTTGCGTGTATCTCAGGTGTTGTGGGCTCAGTTAGACACTGAGCGTAAAGAGCATCATGTATCTTGTGTAGAGCTTTTCTATCGACTTCACTGCTTGGCTCCATCTGCATCAATCTGTGAGGACATCATCTGCTTGGGTTTACTGAGCGGGGACAAGgtTGTATGTCTGGAGGCGCTCCACAGGTTTTCTGTCTTGTGGCACCTGACACGAGAAATCCAGACCAGTCGTAGCACCTCTCTCAACCGCTCATTTGACAGGTCTTTGTTTGTGGTATTAGATAGCTTGAACAATCAGGATGGTAGTGTTCGTGCTGCAGCACAGAACTGGCTAGTTCGAGCTCTCTCTCTCAGTGATGTAGTCCGTATCTTGGAACCAGTGCTGCTCTTACTGTTGGACCCGAAAACACAGAGATCACCCATACAAAGCATCAAACAGAATCTTTCTGCACTGATCTGGCGAGACCGATCCATCCCAAAAAGTGCTGGAGACAGCATGACACCTGGTTGCCAAACAGAAGAAAGCTTTGTGAATCGCATAACCATAGTAGATCGTGAAGCACTGTGGGCTGAGTTGGAGCGAGACCCAGAATTAACACCCCCGGATTCGCCAACAATATCCCAGAGTGAGAGTGATGAGACAGAGGGGGAGGATGAAGAAGTAGAGGAAGAAGAGGAAAGTGaacacacagaatctgcagacacCAGCGGAGCTCAGAACTCCACTGAAAACTCCAGCTCAAGCTCCGCCCCTTACTTACAGCGGCATGAGGATGGCAGTGTGGAAGAGGATGCTGTTCCCAATGGCTTGCAGAGGGTGGATTCAGAACGTACACAGGTTTCCGATTCGCTCTCTAGTGATGAAGATGATGGGCAGTTAGAAGCCATGGCCAAGACCCGGCAGCTGAAACGACAGCGGGAGAAACGTGAGGCGGTGGATTCACTCTTCCGCCATGTTCTGCTCTATAAGCAGAAGTACGAGAGCAGCCAGATTCTGTACGCCTTCACTATTTTAGAGACCATTCTCCGAACAAGTGCAGGGCCGTTTGTGGAGGCTCTCTCCAGTACTTCTCTGGACTGCAGTTCTATTGCTCATCTCAACCTCATCCAGAACCTTCTGCAGAGGCACCGTCAGGCGCAGGATGGTGGCAGCTTCTATGGGCAATTGCAGAACTCAACTCCACCAAGTGGAGAGCTGCTTACCAGCCTTTGCATGCGCTACCTCCGCTCTCACTATCCCTCATATGCTAGTGTTCCCACTCGCCAACTCCAAGCCAATCGAGAGGTGCAGGTAAAAAGTGTGGAAGTGCTGACAGAGTTGATGATCCAGTTGGTGAGGGTGGCCCAGCAAAATGGAGACACGAAGGGAACCGCTGGTCTGGAAGCTGTGCGCAACCTTCTTTGGGGATACAAGGTGCAGCAGTACGTCCTTCTAACACTTTCCGCCTCCATGTATGTCTGCCAGAGACACACGTTGCCAGAAGAAGACCAAGGAGAAGACGGTGGAGAGATCTCAGAGGAGAGCCTTATCAATTTTGGCCGTGATGGGACCTGGGCTGAGCACCCGCTCCAAATTGCCCTACTGAAGCTTCTAAAGGTTCTTATAGTATTGGAGCACCACTCTAACCCACAGCGTCGAGCAGAACCACCGTCCTCTGCTTTGGCACGAGAGTGGCAAACAGCTGTGATGTTCCAGCAGTCCATAAAAGCAGTGCGTTATGTATCCAGTCAGCCTATCACTGCTCAGGGCATGTTTGTGTCGGCAGCAGCCCGGGCTTTGCACCCACAGTATGGCTGTGCCATGCATCCTGCCTGGGTCACCCTGCTGTGTGATGTTCTGCCATATTTAGGACGCTCACTGGCCATCATTGTATCACCGATAATTGCCCAGATCTGCAGGAACCTGGATGAGCTTGTTAAACAGCACGAGCACGATGGAATCAAGGGTTCACACAACGGTACCTTAAAGAGGGAGAACATTGCACCTGACTATCCTCTGACGCTGCTGGAGGGGCTGACCACTATAACACACTACTGTCTGCTGGACCACAAGAAAGCAACTGCAGGCTGTGATGTTCCAGACCTGCGAAATGCCAGCAATGCCATTCTGGAGGAGTTTCCACATATGATTAGCAGTATGGCCTTACTCTGGGGTGTGGTCAAGGGCTGTGACTCCACCCATGGTAGCAGAGCCACACCTACTTCTGTGTACTTTAAAAGCACAAAGATCCTGCGGCAAAAGGTTCTGGAGTTCTTAATGCCATTGACCCAGCAGTTTGGTGTGCAGGTCATGGCATCTGTGGCTGCTGTGTGGAATAGCAGGAAAAGCCGCAAAAGACGTTCCAGAAACAAGATTTTGCCAGATGCTAGTGATTCACAGATGACTCTAGTGGATCTAGTGAAGGCATTAAACACACTCCGTACAGACACCATACTGCAGCTCATCAGAGAGGTGGTGAAGAAACCTCATCAGATCAAAGGAGACCAGGTACTGCATGCACACATAGATCTCACCGCTCAAGCTCTTCAGGAGAACATCAATCCTCTCCTCTGTCTGCTGAGAGAATCTGTTCAGCTTAACCTCGCCCCACCTGGACACTTCTTACTCCTTGgTCAGCGTATACTGGAAGCGGTGGGAGCTGTGGCCGGCTCGTCTCTCGAGCAGACCAGCTGGCTGAGTAGAAACCTGGAGGTTAAAGCACAGCCTCAAGTCTGTCTTCAGGGAGATGAAGATGACCATGACTATGCAGGTCAGGGCAGTACTATGGTATCGTCTTCAGCACCATCTGTATTCAGTGTACAAGCTCTGGTTCTGCTGGCTGAGGTTCTGGCTCCACTTTTGGACATGGTCTATCGCAGCGACGAGAAGGAGAAAGCTGTGCCTCTCATTTCACGTCTAATGTATTATGTTTTTCCCTATCTAAAAAATCACAGTGCCTATAACATGCCTAGTTTCTGTGCGGGTGCTCAGTTGTTGAGCAGTCTGAGTGGATATGCCTACACTAAGCGAGCATGGAAGAAAGAGGTGCTGGAGCTTTTCATGGACCCTCTGTTTTTTACAATGGAGTCTTCATGTTCCTACCACTGGAGATCCATTATAGACCATCTTCTGACTCATGAGAAAACCATGTTCAAAGACTTGATGAGTATGCAGAGCAGTTCTTTAAAACTCTTCAACAGCGCTGAGCAGAAGCCCATGTTACTGAAACGACAGGCTTTTGCCATGTTTAGTGGAGAAAATGACCAGTACCACTTCTATTTGCCTCTAATTCAAGATGTTTCTCATGTTTCGTGTTCTCCTTTTGAGGATCTCACCACAACATCTCACCTCCCTCTGGCCAATCATGGTGACTGA
>TCONS_00073341
TGTGACTCCACCCATGGTAGCAGAGCCACACCTACTTCTGTGTACTTTAAAAGCACAAAGATCCTGCGGCAAAAGGTTCTGGAGTTCTTAATGCCATTGACCCAGCAGTTTGGTGTGCAGGTCATGGCATCTGTGGCTGCTGTGTGGAATAGCAGGAAAAGCCGCAAAAGACGTTCCAGAAACAAGATTTTGCCAGATGCTAGTGATTCACAGATGACTCTAGTGGATCTAGTGAAGGCATTAAACACACTCCGTACAGACACCATACTGCAGCTCATCAGAGAGGTGGTGAAGAAACCTCATCAGATCAAAGGAGACCAGGTACTGCATGCACACATAGAGTATAACAACTTCCCTTACTAGAGGTGAGAAATAGTGATTACAATTTTATCCTTCATTCAAATGGAAAgttcaataaacaaaaaaaaaaaa

Function

symbol description
dop1b Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B).

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0005768 endosome cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1195 Predicted to act upstream of or within Golgi to endosome transport and protein transport. Predicted to be active in endosome and trans-Golgi network. Orthologous to human DOP1B (DOP1 leucine zipper like protein B).

Ensembl:

ensembl_id ENSDARG00000055857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073339 False 5553 mRNA 0.46 23 33174064 33195586
TCONS_00073340 False 3417 mRNA 0.50 20 33174193 33187569
TCONS_00073341 True 432 processed_transcript 0.43 3 33180682 33181352

Neighbor

gene id symbol gene type direction distance location
XLOC_037263 dop1b coding upstream 4849 33154841 ~ 33169215 (+)
XLOC_037262 atp5po coding upstream 25191 33145522 ~ 33148873 (+)
XLOC_037261 BX511259.1 coding upstream 91883 33074680 ~ 33082181 (+)
XLOC_037260 vangl1 coding upstream 118624 33009284 ~ 33055440 (+)
XLOC_037259 nhlh2 coding upstream 192404 32978302 ~ 32981660 (+)
XLOC_037265 si:ch211-125e6.11 coding downstream 11988 33207574 ~ 33209659 (+)
XLOC_037266 si:ch211-125e6.12 coding downstream 21359 33216945 ~ 33218269 (+)
XLOC_037267 si:ch211-125e6.13 coding downstream 24756 33220342 ~ 33221670 (+)
XLOC_037268 si:ch211-125e6.14 coding downstream 27325 33222911 ~ 33223829 (+)
XLOC_037269 lectin coding downstream 41258 33236844 ~ 33238249 (+)
XLOC_037257 NA non-coding upstream 278964 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 636680 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 825039 32344883 ~ 32349025 (+)
XLOC_037249 NA non-coding upstream 935955 32223695 ~ 32238109 (+)
XLOC_037270 BX545856.2 non-coding downstream 48612 33244198 ~ 33245755 (+)
XLOC_037276 NA non-coding downstream 531097 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 801556 33997142 ~ 34008566 (+)
XLOC_037285 NA non-coding downstream 1091168 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 1175274 34370860 ~ 34378332 (+)

Expression


Co-expression Network