XLOC_037266 (si:ch211-125e6.12)


Basic Information

Item Value
gene id XLOC_037266
gene name si:ch211-125e6.12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33216945 ~ 33218269 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073344
AATCTGGTCTGTCCTTGCTTCTTGTTCAGCATTTGTGCTCCATTTGTGAATGCAGGGCTGATTGAGCAAGTTCACAAGCTCTGAAACTTTATTGAAGACCTCTGTCTGCACACCAAAGTTCATGATGGTGATGCTGAGAAGTCTTCTGCTGTTTTTCTTCTTGTTCTGCATGGGCATTGCAGCAGAAAGGAGATGCCCACGTCAATGGAGAAGGTCTGGATCTCGATGCTTTAGGCTTTTCTCTACATCAGTGAACTGGGCCACAGCAGAGAAAAATTGTCAACGTCTTGGTGGGAATCTTGCCTCTGTGCTAAACGATGTGGAAAATGATTTTCTGCTGAGTCTGATACCCAACTCCAAACGTTTCTTTATTGGTGGCTATAATGTTGATGAACAGAACTGGTTTTGGTCTGATGGATCTCCATTTGGTTATACAAACTGGTGCTCAGGAGAGCCTAACAACATGAATACGGAGCACTGCTTGGAGATTAACTGGACCGCAAACCGTTGTTGGAACAACTTGCCTTGTTCAGTTGAACTAGGCTATATCTGTGCCAAGAACCTAAATGATTGCTCTTAATTTAAGTGTTCATCTTGTTCAATCACAAGGCTAAATATGCCAATTAAGATGCTGTTCTCATCACCTGCTTGAATCAATAAATCAAAGCAAATCATTGGTGTTTAATA
>TCONS_00073345
ATGATGGTGATGCTGAGAAGTCTTCTGCTGTTTTTCTTCTTGTTCTGCATGGGCATTGCAGCAGAAAGGAGATGCCCACGTCAATGGAGAAGGTCTGGATCTCGATGCTTTAGGCTTTTCTCTACATCAGTGAACTGGGCCACAGCAGAGAAAAATTGTCAACGTCTTGGTGGGAATCTTGCCTCTGTGCTAAACGATGTGGAAAATGATTTTCTGCTGAGTCTGATACCCAACTCCAAACGTTTCTTTATTGGTGGCTATAATGTTGATGAACAGAACTGGTTTTGGTCTGATGGATCTCCATTTGGTTATACAAACTGGTGCTCAGGAGAGCCTAACAACATGAATACGGAGCACTGCTTGGAGATTAACTGGACCGCAAACCGTTGTTGGAACAACTTGCCTTGTTCAGTTGAACTAGGCTATATCTGTGCCAAGAACCTAAATGATTGCTCTTAA

Function

symbol description
si:ch211-125e6.12 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-36 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000092090

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073344 False 687 mRNA 0.42 7 33216945 33218269
TCONS_00073345 True 459 mRNA 0.44 5 33217243 33218162

Neighbor

gene id symbol gene type direction distance location
XLOC_037265 si:ch211-125e6.11 coding upstream 7286 33207574 ~ 33209659 (+)
XLOC_037264 dop1b coding upstream 21359 33174064 ~ 33195586 (+)
XLOC_037263 dop1b coding upstream 47730 33154841 ~ 33169215 (+)
XLOC_037262 atp5po coding upstream 68072 33145522 ~ 33148873 (+)
XLOC_037261 BX511259.1 coding upstream 134764 33074680 ~ 33082181 (+)
XLOC_037267 si:ch211-125e6.13 coding downstream 2073 33220342 ~ 33221670 (+)
XLOC_037268 si:ch211-125e6.14 coding downstream 4642 33222911 ~ 33223829 (+)
XLOC_037269 lectin coding downstream 18575 33236844 ~ 33238249 (+)
XLOC_037270 BX545856.2 coding downstream 25929 33244198 ~ 33245755 (+)
XLOC_037271 usp9 coding downstream 43061 33261330 ~ 33321040 (+)
XLOC_037257 NA non-coding upstream 321845 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 679561 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 867920 32344883 ~ 32349025 (+)
XLOC_037249 NA non-coding upstream 978836 32223695 ~ 32238109 (+)
XLOC_037276 NA non-coding downstream 508414 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 778873 33997142 ~ 34008566 (+)
XLOC_037285 NA non-coding downstream 1068485 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 1152591 34370860 ~ 34378332 (+)

Expression


Co-expression Network