XLOC_037269 (lectin)


Basic Information

Item Value
gene id XLOC_037269
gene name lectin
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33236844 ~ 33238249 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073349
TTTTATTTGACTTGTCTTTACTTAAGGGCTGATTGAGAAACTTCACAAACTCCTCTGGAACTTCATTGGAGACCTCTGTCTGAACATCAAAgTTCATGATGGTGATGCTGAGAAGTCTTCTGCTGCTTTCCTTGTTTTCCATGGGGAATGCAGCAGCTAGGAGATGCACACGTCAATGGAGTAGGTTTGGATCTCGATGCTTTAGATATTTCTCTGTACCAGTGAACTGGGTCACAGCAGAGAGAAACTGTCAACTTCTTGGTGGGAATCTTGTTTCTGTGCAAAATGGTATGGAAAATGATTTTCTGCTGAGTCTTATACCCAACTCCGAACGTTTCTTTATTGGTGGCTATGATGGTGAAGATGAAGAAAACTGGTTTTGGTCTGAAGGATCTTCATTTGGTTATACCAACTGGTGCTCAGGAGAGCCTAACAACATGAATACGGAGCACTGCTTGGAGATCAACTGGACATcgGATCGTTGTTGGAATAACTTGCCTTGTTCAACTGAACAAGGCTATATATGTGCCAAAAACCTGGATGGGTGCTCTTAATTTAAGTGTTCATCTTGTTCAATCACAAGGCTAAATATGCCAATTAAGATACTCTTCTCATCACCTgcttaaatcaataaatcaaagcAAATCATCTGTGTCAAATGGT
>TCONS_00073350
TTATTTGACTTGTCTTTACTTAAGGTTTCTCTAATTATTTAGAATCGCAGTGTTTGTATCTGTGAATTTATAATTTATTCCATGTTTATAGTTCTTTTTTTATAGTGTTTGTGCATTATTTGTGGATGCAGGGCTGATTGAGAAACTTCACAAACTCCTCTGGAACTTCATTGGAGACCTCTGTCTGAACATCAAAgTTCATGATGGTGATGCTGAGAAGTCTTCTGCTGCTTTCCTTGTTTTCCATGGGGAATGCAGCAGCTAGGAGATGCACACGTCAATGGAGTAGGTTTGGATCTCGATGCTTTAGATATTTCTCTGTACCAGTGAACTGGGTCACAGCAGAGAGAAACTGTCAACTTCTTGGTGGGAATCTTGTTTCTGTGCAAAATGGTATGGAAAATGATTTTCTGCTGAGTCTTATACCCAACTCCGAACGTTTCTTTATTGGTGGCTATGATGGTGAAGATGAAGAAAACTGGTTTTGGTCTGAAGGATCTTCATTTGGTTATACCAACTGGTGCTCAGGAGAGCCTAACAACATGAATACGGAGCACTGCTTGGAGATCAACTGGACATcgGATCGTTGTTGGAATAACTTGCCTTGTTCAACTGAACAAGGCTATATATGTGCCAAAAACCTGGATGGGTGCTCTTAATTTAAGTGTTCATCTTGTTCAATCACAAGGCTAAATATGCCAATTAAGATACTCTTCTCATCACCTgcttaaatcaataaatcaaagcAAATCATCTGTG

Function

symbol description
lectin Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-438 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDARG00000055833

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073349 False 663 mRNA 0.41 7 33236844 33238249
TCONS_00073350 True 759 mRNA 0.39 6 33236846 33238240

Neighbor

gene id symbol gene type direction distance location
XLOC_037268 si:ch211-125e6.14 coding upstream 13015 33222911 ~ 33223829 (+)
XLOC_037267 si:ch211-125e6.13 coding upstream 15174 33220342 ~ 33221670 (+)
XLOC_037266 si:ch211-125e6.12 coding upstream 18575 33216945 ~ 33218269 (+)
XLOC_037265 si:ch211-125e6.11 coding upstream 27185 33207574 ~ 33209659 (+)
XLOC_037264 dop1b coding upstream 41258 33174064 ~ 33195586 (+)
XLOC_037270 BX545856.2 coding downstream 5949 33244198 ~ 33245755 (+)
XLOC_037271 usp9 coding downstream 23081 33261330 ~ 33321040 (+)
XLOC_037272 ddx3xa coding downstream 96252 33334501 ~ 33354738 (+)
XLOC_037273 nyx coding downstream 118762 33357011 ~ 33361199 (+)
XLOC_037274 gpr34b coding downstream 179720 33417969 ~ 33419321 (+)
XLOC_037261 BX511259.1 non-coding upstream 154663 33074680 ~ 33082181 (+)
XLOC_037257 NA non-coding upstream 341744 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 699460 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 887819 32344883 ~ 32349025 (+)
XLOC_037249 NA non-coding upstream 998735 32223695 ~ 32238109 (+)
XLOC_037276 NA non-coding downstream 488434 33726683 ~ 33764177 (+)
XLOC_037279 NA non-coding downstream 758893 33997142 ~ 34008566 (+)
XLOC_037285 NA non-coding downstream 1048505 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 1132611 34370860 ~ 34378332 (+)

Expression


Co-expression Network