G1813999 (LOC106582448)


Basic Information

Item Value
gene id G1813999
gene name LOC106582448
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43570568 ~ 43572917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2075248
TCAAGCATTGTGCACTTGCTGGAGCAATCAACGTTGGGTTCTTGTAATTCACCAAGTGACTGTGCTATTTAGAACTGGCGGTGGCATTGGAACGGAAACCATTTCCTTCCAGGTAAATGTCTCTCTCCCAGAACACTTTAGAGAGAACCCGGCGATGGAGTAGAGTGGCTGTCACTCCAATAAGTAAACATAGAAATAGTGTCATTCACACTGCAATGCATTGTGTTATTAAACACACTTTTATTGTGTAGGTGCTAAATGAAAGtgtcattcatccattcatttagggagggagaaagagtaaaTGGTGACATAAAAATTTGATCAAATGAACAATGAAAATGGTAACCCAGGGAAGGTCTGGCTCCCCGTGGCCTACAACCATGTGTAGTTGAGACAGTGTCCGGACCCAGATGTGCATGTGTCTGGTTTCTAAGTTTACACAGCCTATCATAATCTCAAACGATAAagtcatctttttttttttttgtttactagCCATGCATACagttcacaggaggttggtggcacgttaattggggaggatgtgctcgtggtaatggctggaacggaatcagtggaatgaaaTCAAAAACatagtttccaggtgtttgatgccattccatttgctccgttacAGCCATTATTAAAAcgctgttctcccctcagcagcctccactgatacggTTGACAACAGTTCAGTCAGTGTCTTCGTAGGAGCTGGAACTTTCCAGACAAACTATTTACACTACTGTTAAATAACaattataatcatcatcatcatcattactgttacatattatattatcatcattatattattatacatttgaatacttaaagaggagtgggatgtTGAGAAAACGTTGCACCCCAATTCATTGTGATACCCAATCAAAATCAAATTCAATGGAGAGGATGTGGGATGGCACCCATTACTGAAAAGTAAACTGTTTCTAGAGTCTGTAGAGATATTCAAATACTGAAAGATGTCCTCCGAGTACCATCTGAATGAAACGGTTACAATATTCAGCAATCTGTCGTCAGAACATTCTGACACCAAAATTAAAGACAGGATTATCTGACAGACACCTCTGCTACACTTAACACAACACTTCGAAAAGGGGAACACAGGAAGTAAGACTGTCTTTTCCACCAGTTTTTACCCCTTCCGCAAAACAAATAAAAGAGAAAATTAAAAAGAGGCTCATTCAAGTCACCTCTTTGATTCTGGCCTAGTGATGAGTACAACACATCTCATTGGATAAAGGTAGGTAGGCTTTCTCTTTTTCCTGCACAGAGAAACCTAGTACGCAAATCAATTACTCATCCATGTTTCCAAACAAGTAGATCTGAGGGATTACCTCCTCTTGAGTCAGTGCAGTTGCTATCTTCTGCTCTGTCAGTTAAAACGGAGAAAGAAGCTCGATGTGCTGAGAGAAAAACTGGGTCATATCAACAAAACTAAAACTATGTTAAAGAAACATATTAATGATCGCAGAACAGCATAAAGAGTACACATCCTGTTCAGTAATACCGACAGACGACTCAAGACGGAGAAAACAGGATAACATAAAGCGAGTGCACTTTTCTTTAGTcctgtttgtttgtcaatttctCTCGAGGCAAATCCTTTGAATTCCTAATTTAGTTCTATTAATTATGAACATATCATTAATTACATCATGACTGATTTTATGCACCGAAGAGTTCAATTCCACCACATTTCTACCATGAGTTTGTTAATCGTCGCTGTTGTTGGTGTAAGTATTGTCCTCCTCTCTGTGAATCATCCTGTATGcagactccctctctcccctggtgtCCCGCTAGGCCCTGGGGCTATGTTCTCTCTCCACTGGCCACTAGCGTCGCCCTAGGCCCTGGGGGTACGTCCTCTCCCCTGGCGTCGCCCTAGGCCCTGGGGGTACGTCCTCTCTCCCCTGGTGTCGCCCTAGGGCTATGTCCTCTCTCCACTGGCGTCGCCCTAGGCCCTGGGGCTATTGTATATTGCAGGAGGAGCAGCATGGGTCATTCTTGTCTGGCTGGGCGGCGTAGTCCATCTGCCGAACAATCTCGGCAAACAGTTCGTCCACCATGGTTTTGCTCTTGGCCGAGGTCTCCATGAAGGGACAGCCCCACTCCTCGGCCAGAGCCTGGCCCTCGCTGGCCGAcacctccctctcactctccaggTCCACTTTGTTCCCCACCAGGATCACTGGGACCTTCTCGTA

Function

NR:

description
PREDICTED: ras-related protein Rap-2a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2075248 True 2237 lncRNA 0.44 3 43570568 43572917

Neighbor

gene id symbol gene type direction distance location
LOC118943590 NA coding downstream 72176 43493285 ~ 43498392 (-)
LOC110502159 NA coding downstream 410907 43153787 ~ 43159661 (-)
LOC110501903 LOC106582442 coding downstream 468919 43099332 ~ 43101649 (-)
LOC110502158 LOC100137092 coding downstream 503433 43059549 ~ 43067135 (-)
LOC110501902 LOC106582441 coding downstream 514094 43050404 ~ 43056474 (-)
LOC110502160 LOC106576908 coding upstream 13042 43585959 ~ 43587743 (-)
LOC110502161 LOC106582431 coding upstream 38632 43611549 ~ 43612567 (-)
LOC118943640 LOC106582482 coding upstream 94986 43667903 ~ 43669453 (-)
LOC118943591 LOC106582431 coding upstream 107752 43680669 ~ 43681964 (-)
LOC118943592 LOC106582431 coding upstream 116754 43689511 ~ 43692662 (-)
G1813938 NA non-coding downstream 20682 43546550 ~ 43549886 (-)
G1813984 NA non-coding downstream 27245 43542234 ~ 43543323 (-)
G1813983 NA non-coding downstream 28557 43541707 ~ 43542011 (-)
G1813981 LOC106582447 non-coding downstream 34893 43535418 ~ 43535675 (-)
G1813982 NA non-coding downstream 36046 43534304 ~ 43534522 (-)
G1814001 NA non-coding upstream 4325 43577242 ~ 43577838 (-)
G1814021 NA non-coding upstream 60580 43633497 ~ 43640228 (-)
G1814092 NA non-coding upstream 289666 43862583 ~ 43862961 (-)
G1814114 NA non-coding upstream 336665 43909582 ~ 43944371 (-)
G1812404 NA other downstream 892808 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 965548 42603998 ~ 42605768 (-)
G1812079 LOC106582433 other downstream 1181295 42386822 ~ 42389273 (-)
G1811042 NA other downstream 1965337 41604974 ~ 41605231 (-)
LOC110501886 rhg15 other downstream 2104921 41447899 ~ 41523764 (-)
LOC110502171 LOC106582464 other upstream 937490 44473683 ~ 44553607 (-)
G1814480 NA other upstream 1100530 44673447 ~ 44673888 (-)
G1815615 LOC106582489 other upstream 2265833 45838750 ~ 45840982 (-)
G1816841 NA other upstream 3652634 47225551 ~ 47226646 (-)
G1816929 NA other upstream 3828205 47400985 ~ 47402047 (-)

Expression


Co-expression Network