XLOC_037276


Basic Information

Item Value
gene id XLOC_037276
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33726683 ~ 33764177 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075157
cATTTATTGTCCAAGacgatatgtgaacgacctggcAATTTTGTCCGAAACCAGATTTTATCGCAAGCCCAGAAAAGGTGGACTGTTTAAATGAAATGGTTAAATGTCTTCTTCATTCAAGTGGACGTACACAGAAAAGGGAAAAGTCACACTCCTCGGCCAAATTTGTGACTGGATTCAATTAATGcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGGTAAAACGACAGAAAGCTTGACCGTCTCCTACAGAAGACAATGAAGAGCTCTTTGCTGTGTTATCGATGGCACATATGTGAGCTGAATCTGAGCGTACTCGTTAAACTCAGCCATCGCCTTGAGTGGTCTGGATGTGTCTGTGGGGGAAGAAATGAAGCACAGTTAGTGCGGGATGCAAGTTGCAGAAAAGACACCCACCTGAGAGTGCGGTATCAGGTAATGTTTCGCCCAGTTAGTGAAGCTGTTTAAGTTGTTAGCGGAGGGACTGGGCAGGTAAGGTGAGGTGCAAAGGCAGAGAGAGTGGGAGTTTGTCCGCGTGAGAACCCGGCAGTGACAGATGACCCGAGACAGACGTCTGTTGTGCCTCTGCCAGCTGGTTAAGGTGATTGCTGCCATGTCTCCAGCCAGGAATAAGTGGGCTGTGATGTATGAGGAGTGCTGGCAGACCACTGTACTGTTATTCTTACAATCCCAACACTGAAAAAACATGGTGTTTTTATTACACGGCGTAGAAAcctaatatattaataaacagcCTGGAGTGAATTTCCCCAGAAATGAATTTTtcatagagagaaataagtctccGCTCAAGTTTTCTCATGACAGCGAAGCAACTGCCAACTTaggtatatgtttatatatgtactCATTTTTTCATGAGCTTAGAGCTTTACAGTCCTCATGACAGTGTTTCGTGTGCGGCAGTTAAATTCAGTGAGCCACAACGGCTAAAAGGTTTGGGTGTAATGAGGAAAAGAAAGAGAAGCAGAACCCTAAAGGTAACCGACTCCGCAGACCTGGATCAGACAGGGAGGAAATTATCATTTACTAAAACAATGCGCTGCATTATGTATAAATCTTTTTTCATTCTTTGTAAATTTCGAAACCGCAATTGCTCTGAAATCGCAAACACATCAGGCTAATTTAAAACTCTCTCCTTGTGTTTTTCTTACCAGAGCGACTCATTTAACTTTAGCATTCCTTGTGTAAGGATTTTAGGTATCAATTTGCCTGTTTAAATAAATACTCCCTGAAATGTTTAACTGCGGCGGAGCGCATGTGTTGCTGGGTTTACACAAGCACACATCACAGTCTGTTCTTAACTCCGATGCTTCGGACACAGGACGTGCTCTcttcatcatttatttaatatcGGGCATTCCAGCCGCCAtctttatcatcattatcatgCCCAGACATGACTGTTGACATTCAAACCTGGTTGAAAGCGTCTGCCGCACTGATCTGTAATGGACCTGAACAATGCAGTGTGGACACCCCAGCTCAAAAG
>TCONS_00075158
CAAGacgatatgtgaacgacctggcAATTTTGTCCGAAACcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGGTAAAACGACAGAAAGCTTGACCGTCTCCTACAGAAGACAATGAAGAGCTCTTTGCTGTGTTATCGATGGCACATATGTGAGCTGAATCTGAGCGTACTCGTTAAACTCAGCCATCGCCTTGAGTGGTCTGGATGTGTCTGTGGGGGAAGAAATGAAGCACAGTTAGTGCGGGATGCAAGTTGCAGAAAAGACACCCACCTGAGAGTGCGGTATCAGGTAATGTTTCGCCCAGTTAGTGAAGCTGTTTAAGTTGTTAGCGGAGGGACTGGGCAGGTAAGGTGAGGTGCAAAGGCAGAGAGAGTGGGAGTTTGTCCGCGTGAGAACCCGGCAGTGACAGATGACCCGAGACAGACGTCTGTTGTGCCTCTGCCAGCTGGTTAAGGTGATTGCTGCCATGTCTCCAGCCAGGAATAAGTGGGCTGTGATGTATGAGGAGTGCTGGCAGACCACTGTACTGTTATTCTTACAATCCCAACACTGAAAAAACATGGTGTTTTTATTACACGGCGTAGAAAcctaatatattaataaacagcCTGGAGTGAATTTCCCCAGAAATGAATTTTtcatagagagaaataagtctccGCTCAAGTTTTCTCATGACAGCGAAGCAACTGCCAACTTaggtatatgtttatatatgtactCATTTTTTCATGAGCTTAGAGCTTTACAGTCCTCATGACAGTGTTTCGTGTGCGGCAGTTAAATTCAGTGAGCCACAACGGCTAAAAGGTTTGGGTGTAATGAGGAAAAGAAAGAGAAGCAGAACCCTAAAGGTAACCGACTCCGCAGACCTGGATCAGACAGGGAGGAAATTATCATTTACTAAAACAATGCGCTGCATTATGTATAAATCTTTTTTCATTCTTTGTAAATTTCGAAACCGCAATTGCTCTGAAATCGCAAACACATCAGGCTAATTTAAAACTCTCTCCTTGTGTTTTTCTTACCAGAGCGACTCATTTAACTTTAGCATTCCTTGTGTAAGGATTTTAGGTATCAATTTGCCTGTTTAAATAAATACTCCCTGAAATGTTTAACTGCGGCGGAGCGCATGTGTTGCTGGGTTTACACAAGCACACATCACAGTCTGTTCTTAACTCCGATGCTTCGGACACAGGACGTGCTCTcttcatcatttatttaatatcGGGCATTCCAGCCGCCAtctttatcatcattatcatgCCCAGACATGACTGTTGACATTCAAACCTGGTTGAAAGCGTCTGCCGCACTGATCTGTAATGGACCTGAACAATGCAGTGTGGACACCCCAGCTCAAAAG
>TCONS_00075159
acgatatgtgaacgacctggcAATTTTGTCCGAAACATGGTTAAATGTCTTCTTCATTCAAGTGGACGTACACAGAAAAGGGAAAAGTCACACTCCTCGGCCAAATTTGTGACTGGATTCAATTAATGcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGGTAAAACGACAGAAAGCTTGACCGTCTCCTACAGAAGACAATGAAGAGCTCTTTGCTGTGTTATCGATGGCACATATGTGAGCTGAATCTGAGCGTACTCGTTAAACTCAGCCATCGCCTTGAGTGGTCTGGATGTGTCTGTGGGGGAAGAAATGAAGCACAGTTAGTGCGGGATGCAAGTTGCAGAAAAGACACCCACCTGAGAGTGCGGTATCAGGTAATGTTTCGCCCAGTTAGTGAAGCTGTTTAAGTTGTTAGCGGAGGGACTGGGCAGGTAAGGTGAGGTGCAAAGGCAGAGAGAGTGGGAGTTTGTCCGCGTGAGAACCCGGCAGTGACAGATGACCCGAGACAGACGTCTGTTGTGCCTCTGCCAGCTGGTTAAGGTGATTGCTGCCATGTCTCCAGCCAGGAATAAGTGGGCTGTGATGTATGAGGAGTGCTGGCAGACCACTGTACTGTTATTCTTACAATCCCAACACTGAAAAAACATGGTGTTTTTATTACACGGCGTAGAAAcctaatatattaataaacagcCTGGAGTGAATTTCCCCAGAAATGAATTTTtcatagagagaaataagtctccGCTCAAGTTTTCTCATGACAGCGAAGCAACTGCCAACTTaggtatatgtttatatatgtactCATTTTTTCATGAGCTTAGAGCTTTACAGTCCTCATGACAGTGTTTCGTGTGCGGCAGTTAAATTCAGTGAGCCACAACGGCTAAAAGGTTTGGGTGTAATGAGGAAAAGAAAGAGAAGCAGAACCCTAAAGGTAACCGACTCCGCAGACCTGGATCAGACAGGGAGGAAATTATCATTTACTAAAACAATGCGCTGCATTATGTATAAATCTTTTTTCATTCTTTGTAAATTTCGAAACCGCAATTGCTCTGAAATCGCAAACACATCAGGCTAATTTAAAACTCTCTCCTTGTGTTTTTCTTACCAGAGCGACTCATTTAACTTTAGCATTCCTTGTGTAAGGATTTTAGGTATCAATTTGCCTGTTTAAATAAATACTCCCTGAAATGTTTAACTGCGGCGGAGCGCATGTGTTGCTGGGTTTACACAAGCACACATCACAGTCTGTTCTTAACTCCGATGCTTCGGACACAGGACGTGCTCTcttcatcatttatttaatatcGGGCATTCCAGCCGCCAtctttatcatcattatcatgCCCAGACATGACTGTTGACATTCAAACCTGGTTGAAAGCGTCTGCCGCACTGATCTGTAATGGACCTGAACAATGCAGTGTGGACACCCCAGCTCAAAAG
>TCONS_00075160
ctggcAATTTTGTCCGAAACcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGTGTCCTCTGGAAGCACAGCGGGGACGGGGTTTTCTCTCCAGTTGATTCCGGATAGAAAAGCGTGATAGTCAATCTTCTCTGACTCGCCTGCAAACCTGGATGTGAACATGAGAGACGCAGGAGATTTAGAGGCGTTGTGGTGAAATGATTCACGGATAATGAATGAGGGTTGTGCTCTGTTGACCCTACTTCTCCAGAAGGGCTCTTAGCAGGTCATCAGACAGGGGCAGTCGAAAAGCCTTACAGATGATCCGGGCCTCTTTAGACGAGAGCTGGCCACATCTACAAAGACAAATGAGTGGACAAAAAGAGAAATGAGTCAGGGTTATTATAGTAACTAAAGataaaatc
>TCONS_00075161
gttCTTGTCATTTACTGTACATTTCCACAATGCAAACATCATAGTTATCATAGATGTAGGTGATTAACTTGACAACCTGCTGCTATTAGGTGTTATGAGCCATTGTCATACTTTGATGatgaaataaacacttaaaactgACATTTTCCACATATAGTCCGGCATGGTAGATTGTAAACCCCCACAGTAAAATCATGTACACAAGGTTTACAAAGTTTGACATTGGCAATACAAGAGTTTTTTCTTTGTTACTATATTATTAGGTATAATGAAGCAAAAATGTATGCTGGGACATGGGCAATTCCAGAGACTTTAAGGAGACAGATCACACAATAACGAGTTCTATTATTATTTACCTACCTGTAACCCAAAAATTGTATGACTTTATTTCTTCTgtggaacaaaaataaaaatatatatttttttctgtacaaTTTGAAAGGggacattcaatcattcattttccttcagcttattccctttatttatcaggggtcaccacagcggaatgaaccgccaactattccagcatatgttttacacagcggatgcacacgcgagcacggggagaacatgcaaactccacagagaaatgccaactagcccagccaggattcgaaccagcgaccttcttgctgtgaggtaacagtgcttaccactgagccaccgtgtcatccTGAAAGGGAACATGTTGTTTTGAATTCTATACACTTGTCTAAATTAAACAAGAGCGATGAAATGTCATACAAGGGTGCATTTCTTGAATGATGACATAACTCTCTTGACAAAAACTAACTAGCTAGTCATAACTTTAGTGATGTCGCAGGTGGTGGAGTGACAAGCTCTCGTAATTAAACAGTTTAAGGTCAGTAATGTTAGATTATTGCTGCAAAAACAACTACAAACATGGCATCTAAAGATTTGTTCTTCAACTACTCTGTTGTTGGTACCGGAGCAAGTGTGCACATGCACACTCTTGTTTTATGTTTGGAATAAAGCATGAAAAATGTTCTGCaatttacattacttattttccATGACGCATTTACCAAGTGCATGCTTTCTTAGGGTTCATATGTCACATTAAGAAGATATGCTTCTAAACACAGAAAGAAAGCTGAAGCCATAACCACACAAGCCTGTTGTGATGTTTATGAATTTTCTTGTTAACTATGCATTCTGGTAATGCCAAATTGTTATGTTTGTAAAAACTGAACTTGCTAACCTGGTTGGTTGATGGTTTTAAGCAACACGCCCCTGGTTTTGAATGACATGAGAtttgagtaaataataataacagaataaataaaaaattggggCTGGAGGGGAGAATTTGAAACTCTATCCTAGACATAAAACAAACTATAGTTCACCACTATCATTGTCTATGAAAACATTGAGGCTTCTCTGTCCTGGTTTGTATTTAGCCTCTCTGATATTGTAAAACGTAGTCCACCAAAGTGACTCCCACTTAGCTTCATCAAATTTCCTTCAAGATTTACGATGTTGTTGTCAGCATCCGCTATTTTACACACGCAGTGATCAAAACAATGGAATGCAATAAAAGTAAATTGACTGGCTGAGCGCATGCGCTGGTGTGACAAGCAGGCCGACATCTGGAAATCCGAGTGCATGCGCCGCTTTACACATGATGTGATTCTTCTTGAAGTCTCGATGGGTTGTTGGCAACATTTCGGCAGTGCTAATGAATCGTAAAATGGTTGCTCTGAATCATCAGCAATAAAGTGTACCTtcaaacttttttgtgtgtttcagcCCAGAGGGTCTTTCTCCATGACAAATTCATTCAGCTGCACTCCTCACAGCTGCACGCAAGGATGTAACGGTGACACCCTGCAGGATAGTCAGCAGAGGACATGTGACCAGAAGAAGTAGAATGCCCGGCTGGCTCAGAGCGACCGAGTTCCTCATAGTGTCTGCAGGAGCATCTGCAGTCTTTCAACACTCAGCTATTCTTTCAACTTCCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075157 False 1649 lncRNA 0.45 5 33726683 33742935
TCONS_00075158 False 1502 lncRNA 0.45 3 33726694 33742935
TCONS_00075159 False 1590 lncRNA 0.45 4 33726698 33742935
TCONS_00075160 False 538 lncRNA 0.49 4 33726714 33764177
TCONS_00075161 True 1988 lncRNA 0.39 3 33733161 33752405

Neighbor

gene id symbol gene type direction distance location
XLOC_037275 si:dkey-216e24.9 coding upstream 299648 33423170 ~ 33427035 (+)
XLOC_037274 gpr34b coding upstream 307362 33417969 ~ 33419321 (+)
XLOC_037273 nyx coding upstream 365484 33357011 ~ 33361199 (+)
XLOC_037272 ddx3xa coding upstream 371945 33334501 ~ 33354738 (+)
XLOC_037271 usp9 coding upstream 405643 33261330 ~ 33321040 (+)
XLOC_037277 BX572627.1 coding downstream 18884 33783061 ~ 33799756 (+)
XLOC_037278 kdm6a coding downstream 24212 33788389 ~ 33862124 (+)
XLOC_037279 NA coding downstream 232965 33997142 ~ 34008566 (+)
XLOC_037280 ccdc80 coding downstream 324979 34089156 ~ 34113209 (+)
XLOC_037281 f5 coding downstream 362828 34127005 ~ 34147996 (+)
XLOC_037270 BX545856.2 non-coding upstream 480928 33244198 ~ 33245755 (+)
XLOC_037261 BX511259.1 non-coding upstream 644502 33074680 ~ 33082181 (+)
XLOC_037257 NA non-coding upstream 831583 32891897 ~ 32895100 (+)
XLOC_037254 NA non-coding upstream 1189299 32536746 ~ 32537384 (+)
XLOC_037252 NA non-coding upstream 1377658 32344883 ~ 32349025 (+)
XLOC_037285 NA non-coding downstream 522577 34286754 ~ 34296124 (+)
XLOC_037287 NA non-coding downstream 606683 34370860 ~ 34378332 (+)
XLOC_037289 NA non-coding downstream 626274 34390451 ~ 34391153 (+)
XLOC_037293 BX601644.1 non-coding downstream 1026573 34790750 ~ 34790887 (+)

Expression


Co-expression Network