Fish Transcriptome and Expression Database

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model fish

XLOC_037277 (BX572627.1)

Basic Information

Item	Value
gene id	XLOC_037277
gene name	BX572627.1
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	33783061 ~ 33799756 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073359
ACGGTTGTGGCCGGAAtttttttattattaatCATTTCCTTGCATATTGGATATAaccatgtgccatggcgcaaagtggattttcccgtccttaaattagcaaaaatttcaaagaaaaatgaaagaaaagctggaccacaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113245

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00073359	True	141	mRNA	0.35	7	33783061	33799756

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_037276	NA	coding	upstream	18884	33726683 ~ 33764177 (+)
XLOC_037275	si:dkey-216e24.9	coding	upstream	356026	33423170 ~ 33427035 (+)
XLOC_037274	gpr34b	coding	upstream	363740	33417969 ~ 33419321 (+)
XLOC_037273	nyx	coding	upstream	421862	33357011 ~ 33361199 (+)
XLOC_037272	ddx3xa	coding	upstream	428323	33334501 ~ 33354738 (+)
XLOC_037279	NA	coding	downstream	197386	33997142 ~ 34008566 (+)
XLOC_037280	ccdc80	coding	downstream	289400	34089156 ~ 34113209 (+)
XLOC_037281	f5	coding	downstream	327249	34127005 ~ 34147996 (+)
XLOC_037282	gpr161	coding	downstream	348958	34148714 ~ 34162374 (+)
XLOC_037283	mpc2	coding	downstream	422241	34221997 ~ 34227472 (+)
XLOC_037270	BX545856.2	non-coding	upstream	537306	33244198 ~ 33245755 (+)
XLOC_037261	BX511259.1	non-coding	upstream	700880	33074680 ~ 33082181 (+)
XLOC_037257	NA	non-coding	upstream	887961	32891897 ~ 32895100 (+)
XLOC_037254	NA	non-coding	upstream	1245677	32536746 ~ 32537384 (+)
XLOC_037285	NA	non-coding	downstream	486998	34286754 ~ 34296124 (+)
XLOC_037287	NA	non-coding	downstream	571104	34370860 ~ 34378332 (+)
XLOC_037289	NA	non-coding	downstream	590695	34390451 ~ 34391153 (+)
XLOC_037293	BX601644.1	non-coding	downstream	990994	34790750 ~ 34790887 (+)

Expression

Co-expression Network