XLOC_037280 (ccdc80)


Basic Information

Item Value
gene id XLOC_037280
gene name ccdc80
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34089156 ~ 34113209 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073364
ATGAGGGCACGGTATATGCTTGGTTTCGGTGTTTTGTGTCTGTTGACATGGGCTGTTTACGTGTCAGAAAGCAGCCCGACCGATAAACAGGCTAAACTCAGACTGATGTCCGTACGACGAGCAAGACAAAACAAATCCCGACAGGGTCAGATCATTAAAACACGTGCTTCTTCTACATGGATCAATGATAAACGCCAACAGATGCAGGGAGACGAAGGTGTACAATTTAGAAGGAATGTCCAATCCAGAAAGGTCTTGGCACAAAGGAGACCAGCACAGGGTGGGACAAGGAATCCAATCCAGCAAGATGATGGAACACCTGGAGCCAGGGCCAGAGTGTCCCGCATGCCAAGCAGTGCTGGTTCTCCAAACCTACTGGCGTCATTTGCAGGGAAAAACCGCCTACTGGTTATTTCCGCACCTCACGACTCTGATGGCTACTACAGATTGATGATGAGTCTGCTTAAACCTGAGGTTTACTGTGAGTTGGCTGAGCGGCACGTGCACCAGATTGTCATGTTCCATCAGGAAGGAGAGTTGGGTGGGAAAATCAGACGCATTACTAATGAAGGGAAAGTGATGGAAGAGCCATTAGATACTGCTCTCATTCCCAGGCTCATGACCTTTCTAAAATTAGAGAAAGGAAAGTTTGGGATGGTTCTTCTTAAGAAGACGCTTCAGGTGGAGGAACGGTATCCATACCCGGTCCGACTGGAAGCAATGTATGAAGTTATCGACCAGTCACCTATGCGCAAAATGGAAAAAGTACGGCAGAAAGGCTTTGTGCAGAAGTGTAAAGGGGCTGGGGTGGAGGGTCAGGTGGTTGAGGGTGTCCTGACCACTGATTCCCAGGTGGACCCACCAACAGAAAGGAGAAAAGAGATTCGGAAACCCATTCGAAGACCAACAACAACTACCACTCCAGCTCCAACAAGACCAACAACTACCACCACCACTACCAAAGCAACTACTACCACCACAACACGTCCCCCAACTACAACCCGATCTACCACCAccacaacaacaacgacaacaacaacaacgcggccaaccacaacaacaacacgGACCACCACCACTCCAAGGACTACCAGAGCTAATACTACCCCTCAATGGATCCCAGCCCACAAGACCACTGCCGAACCTTACTATTACAATCGTAGGGACAGATACCAGACCACCTCACCCCCAACTGACTCAGCAAGATACAGAGACAACCACACTTCTAAAAAAGAATACAACCATAGACATACCAACACTATACCAACACAACACAAGCCAACTAAAGTAAGGCCTACAAAGAAAAAGAATGGCGATAAAGATATTAGCAACGCGTATGAGGAGAAATATGACGTAGGTGTGCCTACCGATGCCTATCctgaagaaaaagaggaagaaatCGTGCCCACCAAAAGAGGCAAGGGCAAAAcagataaaaagaagaaaaaggacAAGACAGATAAGCTGTCTAAAAAGGACAAAgcagagaggagaggaaaagatGGAAAGGGTGGTAAGAAAAATGGAAAGAAAGTTCCAAAGATTCTTGAGAAAGAAGATTATCAGAAACCAACAAAAAGACCACCACCGCCACCGCCACCTAAAGGAACTCTGGCAACCTTTTTGGACTATTTTGAAAGCAGGAGGAGATTAATTttGATCACCTCTCCAACAGAGGAGAACAGCATGTATATTCAGCAGAGGGATGAATACTTGGAGCACGTGTGTGAAATGGCAATCAGGAAAGTAACCATCATCACCATCTTTGGCACATTTAGGAATAGCACCATGAAAATTGATCATTACCAGCTTGAGAAGGACAAGCCCATGAAAGGTCTGAGACAGGAGGATTTGGAGAACCAGGATCTCATCATGGAGCTGAGGAAAGAGTACGGAATGACCTACAACGATTTCTACGTGGTCCTCACAGATCTGGACATGAAGGCGAAGCAATACTATGAAGTGCCAATTGCAATGAAGGCTGTGTTCGACTACATCGACACGTTTTCATCACGTATCAGAGAGATGGAGCAACAGAAGAGGGATGGGGTGACGTGCAAAAAAGAAGACAAGCCCAGATCATTGGAGAACTTCCTTTCCAGATTCCGCTGGAGACGCAGGTTGTTTGTCATATCTGCACCAAACGATGAGGAATGGGCCTATCAGCAACAGCTTTATGCACTGACCAGTCAGGCCTGCAACCTGGGTCTTCGTCATGTGTCCGTGCTGAAGCTGGTCGGTACAGACCTGTTAGACATGGGAGGAGTGTTAGAGCTTTACCCCATCAACGGTAGTGCAACGGTGGAGCGTGAGGGTATCTCTGCCACTCTAGTAAGAGACATCAGAAACTACTTCCAGATCAGCCCCGAGTACTTTTCCATGCTGCTGGTTGGAAAAGACGGAAATGTCAAATCCTGGTACCCGTCACCCATGTGGTCCATGGCCATCATCTATGACCTGATCGACTCCATGCAGCTCCGCAGACAGGAAATGGCCATCCAGCAGTCTCTAGGTATGCGCTGCCCTGAGGATGAGTACGGTGGATATGGTTATCATCATCATGAGGGTTACCAGGAAGGTTATCATCAGGGTTATGGATATTAG

Function

symbol description
ccdc80 Acts upstream of or within regulation of systemic arterial blood pressure and somitogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including cardiovascular system; mesonephric duct; nervous system; pleuroperitoneal region; and solid lens vesicle. Used to study pulmonary hypertension. Orthologous to human CCDC80 (coiled-coil domain containing 80).

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0003073 regulation of systemic arterial blood pressure biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-56 Acts upstream of or within regulation of systemic arterial blood pressure and somitogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including cardiovascular system; mesonephric duct; nervous system; pleuroperitoneal region; and solid lens vesicle. Used to study pulmonary hypertension. Orthologous to human CCDC80 (coiled-coil domain containing 80).

Ensembl:

ensembl_id ENSDARG00000000002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073364 True 2604 mRNA 0.47 7 34089156 34113209

Neighbor

gene id symbol gene type direction distance location
XLOC_037279 NA coding upstream 80590 33997142 ~ 34008566 (+)
XLOC_037278 kdm6a coding upstream 227032 33788389 ~ 33862124 (+)
XLOC_037277 BX572627.1 coding upstream 289400 33783061 ~ 33799756 (+)
XLOC_037276 NA coding upstream 324979 33726683 ~ 33764177 (+)
XLOC_037275 si:dkey-216e24.9 coding upstream 662121 33423170 ~ 33427035 (+)
XLOC_037281 f5 coding downstream 13796 34127005 ~ 34147996 (+)
XLOC_037282 gpr161 coding downstream 35505 34148714 ~ 34162374 (+)
XLOC_037283 mpc2 coding downstream 108788 34221997 ~ 34227472 (+)
XLOC_037284 nxpe3 coding downstream 116858 34230067 ~ 34243967 (+)
XLOC_037285 NA coding downstream 173545 34286754 ~ 34296124 (+)
XLOC_037270 BX545856.2 non-coding upstream 843401 33244198 ~ 33245755 (+)
XLOC_037261 BX511259.1 non-coding upstream 1006975 33074680 ~ 33082181 (+)
XLOC_037257 NA non-coding upstream 1194056 32891897 ~ 32895100 (+)
XLOC_037287 NA non-coding downstream 257651 34370860 ~ 34378332 (+)
XLOC_037289 NA non-coding downstream 277242 34390451 ~ 34391153 (+)
XLOC_037293 BX601644.1 non-coding downstream 677541 34790750 ~ 34790887 (+)
XLOC_037294 BX601644.6 non-coding downstream 709640 34822849 ~ 34828098 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03123137_03137452 CCDC80 coding CI01000009 null 3122116 ~ 3138311 (+)