XLOC_037288 (lamp1b)


Basic Information

Item Value
gene id XLOC_037288
gene name lamp1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34380299 ~ 34389875 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073378
ACGTGACAGTGGTGTTTCCTGCTGCGAGAAACTAAACAAATCTGACCTACTGCGTTTGTAATCAGATGTAGATTGGGCACAACGGCAGCTCAAACAGACCATTTTCCTCTGCTGCATAACGACAGTTATCTGGCTAGATAGCTTGGAGACGCTTATTAATTACACTGACATCATCTGTTTTTATCGAGCGTGTTTTGATTTACTTTGGCAAGAAACATGATCTCTATCATCCCCAAACAAAACAGACCCGTCGGGGCAATTTTTAGCCTGCTGTTAGCTCTAACCATACACCAGACTTTGACCTCCAATGTTCCGACCACTGCGGCCACCCCTGAAACCAGCTCTCCTCCGGCCTCTCCTGTCACCCCAGGACCCCCAGAGCGGGGCAACTACAATGTCACCAATGCCAATGATACGGTCTGTCTCCTGGCACGCATGGCCCTCCAACTCAACATAAGCTTCACCTCAACCTCTCAGGGCAAGCTTGTCCAGGAGGTCTTGAACTTGCATCCAAACCTCGTTAAATTCTCTGGATCCTGTGAGTCGGACCGTGCATCTCTGATTCTCACAGAGGACAACATTACTCTGACTTTCAGCTTCTCTTTAAACTCCACATCAAACAAGTATCATCTTAGTGGTTTGGAGCTGTCAGCTTCATTGCCTGATATGGCTAagggtCTTGTGGTCAGAAACACCACACTGAACTACTTGGTGGGAACGCTGGGCCACTCTTACATGTGTCAGAAGGAAAAGACCTTGAGCGTCACACAAAATTTCTCTCTCAACACCTTCCAACTTCAAGTGCAACCTTTCGGTGTCAAGGGAGATTTTGGAGCAGCTGAGGAGTGCGAGTTGGATGAGGACGACATGTTGATCCCCATCGTTGTGGGCGCTGCATTGGCTGTTCTAGTGCTCATAGTGATCCTGGCGTACCTGATCGGCAGAAACAGGAGTCACGCCGGCTACCAGACCATCTAGACTCCCCTCATGAATCATCTTTAAGCCAGGATCTGGAGACGCCACTGATTTCTGCTCTAATCTGGACTGCAGCCATCTAGTTTTTAACCTGCCCTGCCCTCTGCTGGTGTCTCCCACTGCCTCTGCTCAGGTGGATCTGACCTTTCCTGGACTTTCTGTTGTATTATGTTAAACATAGTATAATTAATTCATACTAAAGGGCAAAAGAGGGGGGCTGTAGGTCAAGCTTGTTTCCAGCAACCAGATTAAGCTCATCTATCTGTTGTGTCATTTAGGCTTAATCTGGGTCTCTGAAAACATAGAATTTTTTGGTACCTCACATTCTTTAATTTAtcgttgtgtatttatttatagaactAGGGGGATTTAGGGAAACTGAGGATGGTTGTTACTCAGTCTAAAAGGGACTACaaatttgacactttttttttttttttttttttgggttaatAGTTGGGATTATAAAAGACAGGATTGCTTCTGAGATTCACTAGATTGGACATTTTATTGCCGTTAACAAAACCTTGCATAACAGTTTTGACTTGGATGTTAATTCTATCATTTTTAATAAGGAAAAGTTCGACCTGAGAGAATTTATTTTGTAGAATAGAGTACCTGTTGATGGGATTGTTCCCCCCAAAAAGGAAATTGAAATTAATTTACTTGCCTTCAAGTGATTGCAAAcctttttttagtttcttttgtctgatgaacaaaaagatattttgaatatgTTAGAAACATTTAACCAATCACTTCCATAATAATGAAAGCATACTATAGAGGTCAatcggtttccaacattcttctccatcattaaaaaaacaaacaaactcaaaatggctgagtaaatgataacagttTTAAGTTTGGGGTGAATTATCCTTTTAATAACACTAAATGTTTCTTTGTGTCCCCTCATACTACATATCAAAACTATATAACCCGCTTGCTTCCATTTAGCATGGTATTTGCAGACATTCAGAAGCATTAAAGGGAAATTCTGCTAGATTGCTGAAATATTATGGTTTTGCACTATGGGATGTACAAAGGGTACGATTTACACTGACATAAGCAGAACATTCTCAGCAACTTGAGGTAGGTTTAAATTATTATGGACCCAGGTAAATGGTTAACTGTTACAAACACAAGGAGTGCACTGAGAGAAACACCGTTTATCATAGGGTAAATGAATCTCTCCTTTATAATGGGCGTTCATATGGAATGATTGCATATGTGGAGTTGTTGTGGATATTGAAGTGCTGCCTTGATTGCTGTGAAGTTCATATTGTTTTAAGGGAATGCGATtctaaatttctaaataaaaatgaaaaataaataaaagatgaatTCTA

Function

symbol description
lamp1b Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Is expressed in eye. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

GO:

id name namespace
GO:0072594 establishment of protein localization to organelle biological_process
GO:0005764 lysosome cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9303 Predicted to be involved in establishment of protein localization to organelle. Predicted to be located in lysosome and membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome membrane; lysosomal membrane; and plasma membrane. Is expressed in eye. Orthologous to human LAMP1 (lysosomal associated membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000092610

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073378 True 2333 mRNA 0.41 6 34380299 34389875

Neighbor

gene id symbol gene type direction distance location
XLOC_037286 pou2f1b coding upstream 1625 34319333 ~ 34378674 (+)
XLOC_037287 NA coding upstream 1967 34370860 ~ 34378332 (+)
XLOC_037285 NA coding upstream 84175 34286754 ~ 34296124 (+)
XLOC_037284 nxpe3 coding upstream 136332 34230067 ~ 34243967 (+)
XLOC_037283 mpc2 coding upstream 152827 34221997 ~ 34227472 (+)
XLOC_037289 NA coding downstream 576 34390451 ~ 34391153 (+)
XLOC_037290 med14 coding downstream 7641 34397516 ~ 34429575 (+)
XLOC_037291 si:ch211-269e2.1 coding downstream 43178 34433053 ~ 34482698 (+)
XLOC_037292 shox coding downstream 251362 34641237 ~ 34647695 (+)
XLOC_037293 BX601644.1 coding downstream 400875 34790750 ~ 34790887 (+)
XLOC_037279 NA non-coding upstream 371733 33997142 ~ 34008566 (+)
XLOC_037276 NA non-coding upstream 616122 33726683 ~ 33764177 (+)
XLOC_037270 BX545856.2 non-coding upstream 1134544 33244198 ~ 33245755 (+)
XLOC_037294 BX601644.6 non-coding downstream 432974 34822849 ~ 34828098 (+)
XLOC_037296 CR936415.1 non-coding downstream 579575 34969450 ~ 34969567 (+)
XLOC_037297 NA non-coding downstream 580968 34970843 ~ 34973324 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03301176_03305406 LAMP1 coding CI01000009 null 3301176 ~ 3305595 (+)