G1815732


Basic Information

Item Value
gene id G1815732
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45962342 ~ 45993213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2077279
tgacgttagctaatatggtgataACGATGTCGACtatgtgtagcggttagcggttatgatatgaaggtttggctttttttgcctggtcagctagacagctgatgtgttgtgcactgaagtctacaagcaaagggaaaaggtgttaggagatgcgagaaggaattatatattatatatatattataatgtgCAAAAGAATcatactgtttgtatgtggctcctatgaaagtgaactgtgtttgcgtgtggtcAAGGGTGTATTAATTCCgcagattctgttgaaaaacatttcttaaatggaaagaaacggggataaacatacctgcatttgtccaatggaaactctcgtttgcaaaaAAAATCTTAAACGTCACTGACCTGTTTCATTCATCTGCTTGATCTTATATTTAGCATCACATTGAAGTGTTTTACCACGCTctttctatgtagaagaaccccttacagtatcatagacactatgtcctgggatttactatgatcttctatgtagaagaacccctaacagtattatagacactatgtcctgggatttactatggtcttctatgtagaagaaccccttaccttCTAACAATTCTTGGGTAGcttacatgtgtgtgtttgtgagtgtctcAGCTTTTCATATCAGGGTCATAATAGTCtgtagctcaaactgtttggacaTTACAGATGTTTTTTTGTGAGGAGAACTGTTTTCGGGACCCACCCGTGTCACACAAACTCCACTCTATCTCAGCCCCCATTAATCACACAGGTTAATGGTTGGTTCCTGCAGATGAAGAAGGAATAGACAAATCTGATGCAAAAAAAGGAGTATGTAgctcaaacacacaatgtttaaaaggggttgAAGTTAATAAATCACGCTGGTGTGATTGTGCGACTCAAAGCGAGGCCCTACCCGCGCCCCCACCCGGCTCCTGTGTGCTCTCTTGCCAGTTAGGGTGAGGCTACTTGAAGAGAGAGGGCGGCTCCTGTGTGCTCTCTCCACAGTTAGGGTGAGGCTACTTGAAGAGAGAGGGCGGCTCATTGTGTGCTCTCTCACCAGTTAGGGTGAGGCTACCCGAAGAGAGAGGGCGGCTCCTGTGTGCTCTCTCACCAGTTAGGAGAGGTCGGACAGATTCGGTGCCTGTGTCTGCCTCGGTCAAGCACCGTTTGCCTCTCTTCCCAGACATGTTGATGAACGTTCCTGTCCCACCCCAGTAAACCGTTTCCTACCTGGACTTTCGAGACTGGGCTAGCTAACCAAGCGCTGCATATAACTAGCTTTTCCTTCCTGCCCACAGTTGAGTTGCTGGGGTAGCTCTCTTGTTAAGAATACGTAGCTTAAATTCGCTTGGTTATTCTAAATAGTCAAAGATGCTAGCTAGCCTTCCTTGCCAGAGCCCCTTTTGCTTCCCGCACCTCAACTCTTTTCATTCCTGGGAATTATATTGAATTACTATTTGCTCCAGTCTGTTACAACAGCTGTCTGTCCCATTCCCAGGTATGTTACAAGGTATTTTGTCACCAGTAGCTATGACTGGTCTGTAGGGTAACCTCCATGATAAGGCTTTTCCCCTTGGTCTATTTTTTAATGCATGCCTTCCAGCACTGGGTGCCAGCCGGTTGCCAGAACGCATCTTACCGCCTAAACCGAGTGAGGCTCATCACTGATAGCCAGAGCCTGTGTACCCAGAGTGGGCTAGGCTTTAGGCAAACCTTGGCACATGAACACAGGTTTTTCAACTGAGATCCACAGTGTTCACGAGTGTAAAAACTGGTGTGTCTCCCACATATGAGTTAGATGAAAAGTGTCCCATCTCCACATTCAGACACACAGTTGTCAAGATTGGTGGAAGAATCTCTCCCAGTCCCAGGAtttcattggccttgtcaggCATGATTGTAGATCCTTCAGCCAAAGTCGCGAGAGtactccttcagggaacagtagttatagtcataaggCTACACTTTGCATCATACCgtggtatattgtctgatatacaGCTGGAATGCTGTTTAAGCCAATCAGCATCTAGGTCTCAAACTACCTGGTTTATCTGAATGAAAATCACCTTTCTTGAGTTGCAGGGAATTCTCCAGATACTGGTCTGGAGTGATTTCCCTGCCGTCGATCTCGAGCTGTAGAGTGAAATCTCTGACGGTCCACACAAAATTAGGAAAGAACTGCATAAACTGGgtgccctctccttcctcctcatcGACAGTGGAAGACTTTACCttgatcctctctgACGGTCCACACAAAATTAGGAAAGAACTGCGCAAACTGTgagccctctccttcctcctcatcGACAGTGGAAGACTTCACCTTGATCATCTCTGTCAGCTCGTTCACATATCTGTAGGACCGGTTGAGGATTGATACAGCATTTCCCAAAGCTCATGTCAATGTCATGCACTTTTTGTGTACAGGGAAATTACAGGGAAATTACAGGGAAATTACAGGGAaattacaaacaaacaaacaaaacaagtaATTTTCAGTTTAGATTTCAATTGACACAGTAACGTCATTTGTTTGAAAGTCACAGACTTTGCTTTTCGTCCACACCAGCTCTTCATGTTCACTGAAGCTA

Function

NR:

description
glycogen synthase kinase binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2077279 True 2609 lncRNA 0.44 3 45962342 45993213

Neighbor

gene id symbol gene type direction distance location
LOC110501932 LOC106582487 coding downstream 235948 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 374630 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 383436 45550854 ~ 45578906 (-)
LOC110501935 gdf3 coding downstream 418352 45533097 ~ 45543990 (-)
LOC118943614 gdf3 coding downstream 441510 45519847 ~ 45520832 (-)
LOC118943596 NA coding upstream 17902 46011115 ~ 46028506 (-)
ints6 LOC106582497 coding upstream 126175 46119388 ~ 46156972 (-)
spopla spopl coding upstream 876618 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 1049012 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 1093658 47086871 ~ 47103828 (-)
G1815703 NA non-coding downstream 19422 45942401 ~ 45942920 (-)
G1815705 NA non-coding downstream 23541 45938515 ~ 45938801 (-)
G1815751 NA non-coding downstream 28205 45933693 ~ 45934137 (-)
G1815750 NA non-coding downstream 30234 45931878 ~ 45932108 (-)
G1815747 NA non-coding downstream 33638 45928467 ~ 45928704 (-)
G1815781 NA non-coding upstream 16243 46009456 ~ 46009674 (-)
G1815899 NA non-coding upstream 35360 46028573 ~ 46028927 (-)
G1815902 LOC106582500 non-coding upstream 40901 46034114 ~ 46064332 (-)
G1815909 NA non-coding upstream 51122 46044335 ~ 46045898 (-)
G1815931 NA non-coding upstream 96439 46089652 ~ 46117078 (-)
G1815615 LOC106582489 other downstream 121360 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1288454 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1408922 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3284582 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3357322 42603998 ~ 42605768 (-)
G1816841 NA other upstream 1232338 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1407909 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1478081 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 2068836 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2275574 48268787 ~ 48291496 (-)

Expression


Co-expression Network