G1815978


Basic Information

Item Value
gene id G1815978
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46195763 ~ 46229192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2077571
gtcataatataacagagacagtagatctagctggtctgtcttaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctaccctgtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagaccgtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcattatataatagagacagtagatctagctggtctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtagtataatagagacagtagatctagctggtctttcttaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctttcttaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtccgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctttcttaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcacaatataatagagacagtagatctagctggtctgtcgtagtataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagacctagctggtctttcttaatataacagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctttcttaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagtctgtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagaccgtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtagtataatagagacagtagatctagctggtctttcttaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcttaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatacaatatagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataaga
>TU2077565
tttcttaatataacagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagcaggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagcaggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctggtctgtcataatatattagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagctctagctgctctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgctctgtcctaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcttaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctgctctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctttcttaatataatacagacagtagatctagctggtctgtcataatataacagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctatctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacaatctCTCCTGCCATGTCATTCACATGGGCCCTTTTCATTTCTCAATTGCTGCGGTTTGTTTTCCTTTTTATGTGTCCCATTGATTTTGTTGATatacactgagagtacaaa
>TU2077572
tttcttaatataacagagacagtagatctagcctgtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatacaatatagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagccagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagcctgtctgtcgtaatataatagagacagtagatctagctggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagcaggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctgctctgtcgtaatataacagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagcaggtctgtcataatacaatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctggtctgtcataatatattagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcctaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagctctagctgctctgtcataatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgttgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctgctctgtcctaatataatagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcttaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctgctctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctttcttaatataatacagacagtagatctagctggtctgtcataatataacagagacagtagatctagctgctctgtcgtaatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcgtaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctatctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcctaatataacagagacagtagatctagctggtctgtcgtaatataatagagacagtagatctagctggtctgtcgtaatataatagagacaatctCTCCTGCCATGTCATTCACATGGGCCCTTTTCATTTCTCAATTGCTGCGGTTTGTTTTCCTTTTTATGTGTCCCATTGATTTTGTTGATatacactgagagtacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2077571 False 3196 lncRNA 0.37 4 46195763 46229192
TU2077565 False 2759 lncRNA 0.37 2 46218054 46222570
TU2077572 True 2833 lncRNA 0.37 4 46218054 46222570

Neighbor

gene id symbol gene type direction distance location
ints6 LOC106582497 coding downstream 38791 46119388 ~ 46156972 (-)
LOC118943596 NA coding downstream 167257 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 469369 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 608051 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 616857 45550854 ~ 45578906 (-)
spopla spopl coding upstream 640639 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 813033 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 857679 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 941211 47170403 ~ 47260466 (-)
cfap65 cfap65 coding upstream 1248436 47476398 ~ 47553609 (-)
G1815963 NA non-coding downstream 23426 46171889 ~ 46172337 (-)
G1815962 NA non-coding downstream 25619 46169389 ~ 46170144 (-)
G1815949 NA non-coding downstream 65082 46130382 ~ 46130681 (-)
G1815931 NA non-coding downstream 78685 46089652 ~ 46117078 (-)
G1815902 LOC106582500 non-coding downstream 131431 46034114 ~ 46064332 (-)
G1816002 NA non-coding upstream 32681 46261873 ~ 46262108 (-)
G1816012 NA non-coding upstream 45324 46274516 ~ 46275167 (-)
G1816097 NA non-coding upstream 122861 46352053 ~ 46352289 (-)
G1816121 NA non-coding upstream 144005 46373197 ~ 46393702 (-)
G1816131 LOC106584099 non-coding upstream 170732 46399924 ~ 46400292 (-)
G1815615 LOC106582489 other downstream 354781 45838750 ~ 45840982 (-)
G1814480 NA other downstream 1521875 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 1642343 44473683 ~ 44553607 (-)
G1812404 NA other downstream 3518003 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 3590743 42603998 ~ 42605768 (-)
G1816841 NA other upstream 996359 47225551 ~ 47226646 (-)
G1816929 NA other upstream 1171930 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 1242102 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1832857 48057851 ~ 48064453 (-)
G1817668 NA other upstream 2039595 48268787 ~ 48291496 (-)

Expression


Co-expression Network