G1816474


Basic Information

Item Value
gene id G1816474
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 46778259 ~ 46822782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2078123
ccatccagactatccagactaccccaaaaaaatccagaatacccagactacccaaaccatccagaaaaCTCAGACTATAAAAATATCCAGATCATCCAGACTACcaagaccatccagactacccagaccatccagactatccaaaccatacagaatacacagaccatccagactacccaaaccatccagacaacCCAGACCAACCAGACTATCCAGACTAAAAAAACATTGAcactatccagactacccaaaccatccagactatccaaCCATCCAGACTACACACACCATCCAGACAAACCAAAACATCCAGAACATCCTtaccatccagactatccagatTACCCAAACCATAGAGACTATTCAGACAATCCAGACTGTCCAGACTACACAAATCAGAGACTattcagaccatccagactacccaaaccatctaGAATAAGCATACATTCCAGattacccaaaccatccagaccattcagactatccagactacccaaaaccATCCAGACATCCCAGACCATCCAAACTACCTAGACCATCCAGaatatccagactacccaaaccgtcCAGACAAccaaaaccatccagac
>TU2078127
ggtttgggtagtctggatagtgTCAATGTTTTTTTAGTCTGGATAGTCTGGTTGGTCTGGATAGACCATCCAGaatatccagactacccaaaccgtcCAGACTATCCAGACAACCAAAACCACCCAGACCACACGGACTATCTAGACTACCCATACCATTCAGACCATctagactacccaaaccatccagacaacccagacaacccagaccatccagactaaaAAGCCATGGAcactatccagactacccagaccatccagactacccaaccATCCAGACTATTCAGAAAAACCATAACATCCAGAACATCCGTATCATCCAGACTATTCGACAATCCAGACTAACCAAACCATCCAGAAGAAGCAGACATtccagactacccaaaacatccaAACCGTCCAGACCATACAGACTATCCAGAATACCCAAACAAAGCATTCAGTAaatccagaccatccagactacccaaaccgtcCAGACTATCCAGACAACCAAAACCACCCAGACCACACGGACTATCTAGACTACCCATACCattcagaccatccagactacccaaaccatccagacaacccagacaatccagacaacccagaccatccagactaaaaaaccatggacactatccagactacccagaccatccagactacccaaccATCCAGACTATTCAGAAAAACCATAACATCCAGAACATCCGtaccatccagactatccagattacccaAACCATAGAGACTATTCAGACAATCCAGACTGTCCAGACTACACAAATCAGAGACTattcagaccatccagactacccaaaccatctaGAATAAGCATACATTCCAGattacccaaaccatccagaccattcagactatccagactacccaaaaccATCCAGACATCCCAGACCATCCAAACTACCTAGACCATCCAGaatatccagactacccaaaccgtcCAGACAAccaaaaccatccagac
>TU2078128
AGACAACCCAGACTATCCAGACTAAAAAAACATCCAGACAATCCAGACTAGCAAGACCATCCAGAcaacccagacTATCCAGACTAAAAAAACATTGAcactatccagactacccaaaccatccagactatccaaCCATCCAGACTACACACACCATCCAGACAAACCAAAACATCCAGAACATCCTtaccatccagactatccagatTACCCAAACCATAGAGACTATTCAGACAATCCAGACTGTCCAGACTACACAAATCAGAGACTattcagaccatccagactacccaaaccatctaGAATAAGCATACATTCCAGattacccaaaccatccagaccattcagactatccagactacccaaaaccATCCAGACATCCCAGACCATCCAAACTACCTAGACCATCCAGaatatccagactacccaaaccgtcCAGACAAccaaaaccatccagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2078123 False 593 lncRNA 0.44 2 46778259 46795109
TU2078127 False 973 lncRNA 0.46 2 46778259 46803112
TU2078128 True 459 lncRNA 0.44 2 46778259 46822782

Neighbor

gene id symbol gene type direction distance location
ints6 LOC106582497 coding downstream 621287 46119388 ~ 46156972 (-)
LOC118943596 NA coding downstream 749753 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 1051865 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 1190547 45582551 ~ 45587712 (-)
LOC110501933 LOC106582484 coding downstream 1199353 45550854 ~ 45578906 (-)
spopla spopl coding upstream 47049 46869775 ~ 46974132 (-)
LOC110501995 hnmt coding upstream 219443 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 264089 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 347621 47170403 ~ 47260466 (-)
cfap65 cfap65 coding upstream 654846 47476398 ~ 47553609 (-)
G1816472 NA non-coding downstream 5165 46772790 ~ 46773094 (-)
G1816471 LOC101063024 non-coding downstream 6777 46767078 ~ 46771482 (-)
G1816454 NA non-coding downstream 34039 46743784 ~ 46744220 (-)
G1816451 NA non-coding downstream 37636 46740410 ~ 46740623 (-)
G1816448 NA non-coding downstream 41218 46736746 ~ 46737041 (-)
G1816492 NA non-coding upstream 2083 46824865 ~ 46825473 (-)
G1816525 NA non-coding upstream 18981 46841763 ~ 46842095 (-)
G1816527 NA non-coding upstream 23879 46846661 ~ 46847882 (-)
G1816624 NA non-coding upstream 58123 46880905 ~ 46886278 (-)
G1815615 LOC106582489 other downstream 937277 45838750 ~ 45840982 (-)
G1814480 NA other downstream 2104371 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 2224839 44473683 ~ 44553607 (-)
G1812404 NA other downstream 4100499 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 4173239 42603998 ~ 42605768 (-)
G1816841 NA other upstream 402769 47225551 ~ 47226646 (-)
G1816929 NA other upstream 578340 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 648512 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1239267 48057851 ~ 48064453 (-)
G1817668 NA other upstream 1446005 48268787 ~ 48291496 (-)

Expression


Co-expression Network