G1816679


Basic Information

Item Value
gene id G1816679
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47021114 ~ 47022821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2078364
ttacaacacagtgtcacacctgatacacctactattacaacacagtgtcacaccaaaaacacctactactacaacacagtgtcacacctgatacacctactattacaacacggtgtcacatcagatacacctactactacaacacagtgtcacaccagatacacctaatattacaacacggtgtcaccccagatacatctactattacaacacggtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctactattacaacacagtgtcacaccagatacacctactactacaacgcagtgtcacaccagatacacctcctactacaacacagtgtcaccccagatacacctactattacaacacggtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctcctactacaacacagtgtcaccccagatacacctactattacaacacggtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctcctactacaacacagtgtcaccccagatacacctactattacaacacagtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactattacaacacagtgtcacaccaaaaacacctactactacaacacagtgtcacacctgatacacctactattacaacacggtgtcacatcagatacacctactactacaacacagtgtcacaccagatacacctaatattacaacacggtgtcaccccagatacatctactattacaacacggtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctactattacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctcctactacaacacagtgtcaccccagatacacctactattacaacacggtgtcacactaataacacctactactacaacacagtgtcacaccagatacacctactactacaacacagtgtcacaccagatacacctactactacaacacggtgtcacaccagatacacctcctactacaacacggtgtcacaccagatacacctactgttacaacacggtgtcacaccagatacacccactactacaacacagtgtcaccccagatacacctactgttacaacacggtgtcacaccagatacacctactactacaacacggtgtcataccagatacacctactactacaacacggtgtcacaccagatacacctactactacaacacggtgtcataccagatacacctactattacaacacggtgtcacaccagatacccctactattacaacacggtgtcataccagatacacctactactacaacacagtgtcacaccagatacacctaatattacaacacggtgtcacatcagatacacctactactacaacacagtgtcacaccagatacacctaatattacaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2078364 True 1708 lncRNA 0.43 1 47021114 47022821

Neighbor

gene id symbol gene type direction distance location
spopla spopl coding downstream 46982 46869775 ~ 46974132 (-)
ints6 LOC106582497 coding downstream 864142 46119388 ~ 46156972 (-)
LOC118943596 NA coding downstream 992608 46011115 ~ 46028506 (-)
LOC110501932 LOC106582487 coding downstream 1294720 45702953 ~ 45726394 (-)
LOC110501943 NA coding downstream 1433402 45582551 ~ 45587712 (-)
LOC110501995 hnmt coding upstream 19404 47042225 ~ 47061327 (-)
LOC110501994 hnmt coding upstream 64050 47086871 ~ 47103828 (-)
trpm2 LOC106582587 coding upstream 147582 47170403 ~ 47260466 (-)
cfap65 cfap65 coding upstream 454807 47476398 ~ 47553609 (-)
LOC110501961 LOC106582505 coding upstream 606059 47628880 ~ 47635640 (-)
G1816675 NA non-coding downstream 2854 47016526 ~ 47018260 (-)
G1816660 NA non-coding downstream 26110 46994708 ~ 46995004 (-)
G1816656 NA non-coding downstream 32285 46988446 ~ 46988829 (-)
G1816648 NA non-coding downstream 44658 46976196 ~ 46976456 (-)
G1816624 NA non-coding downstream 134836 46880905 ~ 46886278 (-)
G1816691 NA non-coding upstream 14494 47037315 ~ 47038165 (-)
G1816692 NA non-coding upstream 15673 47038494 ~ 47038755 (-)
G1816735 NA non-coding upstream 62614 47085435 ~ 47085923 (-)
G1816770 LOC106583892 non-coding upstream 87724 47110545 ~ 47111662 (-)
G1816774 NA non-coding upstream 91920 47114741 ~ 47114943 (-)
G1815615 LOC106582489 other downstream 1180132 45838750 ~ 45840982 (-)
G1814480 NA other downstream 2347226 44673447 ~ 44673888 (-)
LOC110502171 LOC106582464 other downstream 2467694 44473683 ~ 44553607 (-)
G1812404 NA other downstream 4343354 42677257 ~ 42677760 (-)
LOC110502155 psd12 other downstream 4416094 42603998 ~ 42605768 (-)
G1816841 NA other upstream 202730 47225551 ~ 47226646 (-)
G1816929 NA other upstream 378301 47400985 ~ 47402047 (-)
G1817287 LOC106582526 other upstream 448473 47471294 ~ 47473384 (-)
LOC110501953 ihh other upstream 1039228 48057851 ~ 48064453 (-)
G1817668 NA other upstream 1245966 48268787 ~ 48291496 (-)

Expression


Co-expression Network