XLOC_037301


Basic Information

Item Value
gene id XLOC_037301
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 35160644 ~ 35167934 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075168
ATATGGCATTATAGCGCCTCACTGCGATGCCATATGTCACTGTGTAGAATAGTATGAAGCTGCAGCCAACAATAAACGCGTGGTTCATATTTAGGTGCTTTAGACAATAGAACTTTTGAAAAGACCACGTAGAAACATTGTTTCAGCGTTCAATATGAAAAATATCAAATGGTGAGGTAAAATAAAGCGCGCCTTATCGCAGGTGAGGAGGTGCACCAAGCAAACCATGGCATCATGGGAGATTCTGAGAGCGGGCAGATTAGGAAGGAGGAGCACCTGCCAACAGGCTTACCGCAGGATTTGCTCACTGAAGTCTGCAAGGAATCCTGCAACGCTTCACATTTTCACCGCTTAAAGAGTAAAATCAGGTGTGTGAGAGCATGCACGTTTCCTGGAGTttatgcacacatgcatgcatttataGATTGCTAAAGAATGACTTGCAGTCTTTTGGCACTTGCACACACTTGCTTCATTATGATAAGTGGGATGCCCCAAAATGGTGGCTGACTTCACAGGATGATTCTGGTTGTGTGCAGATTACAGGAGGCTTTCTGCAGCCCTCAGGCTTAGCCAGGGATTTGTTCGCCAAGCATGGCACTTCAG
>TCONS_00075169
TGAAGCTGCAGCCAACAATAAACGCGTGGTTCATATTTAGGTGCTTTAGACAATAGAACTTTTGAAAAGACCACGTAGAAACATTGTTTCAGCGTTCAATATGAAAAATATCAAATGGTGAGGTAAAATAAAGCGCGCCTTATCGCAGGTGAGGAGGTGCACCAAGCAAACCATGGCATCATGGGAGATTCTGAGAGCGGGCAGATTAGGAAGGAGGAGCACCTGCCAACAGGCTTACCGCAGGATTTGCTCACTGAAGTCTGCAAGGAATCCTGCAACGCTTCACATTTTCACCGCTTAAAGAGTAAAATCAGACCCATTTAGGAAAACCTGAGAGGGTTGAGTGAATTGTTTAGGCAAGCGCAGTTGGGCAGTCATAATCTGCTGCGTTCACCCTGATTACAGCCCAAGTGTGTTCAGCGTATAGTTGAGGCCAAGGACACTAATGCCCAGGTGAGTGTGAACTACAGCTCCAGTACTTACACTTGAAGGTGCAGGACACAGCAGGACCCCCGAAGGAAACATGGATGGTTTCTTTCCAACGAGCGCAGGCAACAGATTTTCACAGGTCACCGGCTCCAGGACAAGGACAAGAACCTTTAAGGACCATTGAATCTCAACGACAGTACAGTGATTCCCCACATATTCATTGGCTGTGTTTCAAAACCTAGTGAGGTTTCTTGCTGTCTACCCCCCACATAGAAAGTTTAAATTCTGCTAACCAAACTGAATACTTCTATAATGACTGATTTAGACTCACAATGAATTAAGTGTGTCATGCAAGACAATGATATGCCCTTATTGGTCagaaattgaaatataatttttagaagaaaactatacactttaaaaatatttttaaataataaaaaaaaatctggctaTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075168 False 606 lncRNA 0.45 2 35160644 35163664
TCONS_00075169 True 886 lncRNA 0.42 3 35160698 35167934

Neighbor

gene id symbol gene type direction distance location
XLOC_037300 si:dkey-192g7.3 coding upstream 78648 35077546 ~ 35081996 (+)
XLOC_037299 gabpa coding upstream 130537 35014513 ~ 35030107 (+)
XLOC_037298 jam2b coding upstream 150248 34996245 ~ 35010396 (+)
XLOC_037297 NA coding upstream 187320 34970843 ~ 34973324 (+)
XLOC_037296 CR936415.1 coding upstream 191077 34969450 ~ 34969567 (+)
XLOC_037302 CU074387.1 coding downstream 261268 35429202 ~ 35429316 (+)
XLOC_037303 si:dkey-67c22.2 coding downstream 664360 35832294 ~ 35842375 (+)
XLOC_037304 rcan1a coding downstream 675798 35843732 ~ 35865528 (+)
XLOC_037305 mab21l3 coding downstream 708993 35876927 ~ 35885260 (+)
XLOC_037306 atp1a1b coding downstream 733620 35901554 ~ 35922201 (+)
XLOC_037294 BX601644.6 non-coding upstream 332546 34822849 ~ 34828098 (+)
XLOC_037293 BX601644.1 non-coding upstream 369757 34790750 ~ 34790887 (+)
XLOC_037289 NA non-coding upstream 769491 34390451 ~ 34391153 (+)
XLOC_037307 NA non-coding downstream 819910 35987844 ~ 36102672 (+)
XLOC_037308 NA non-coding downstream 956819 36124753 ~ 36177421 (+)
XLOC_037310 NA non-coding downstream 1602730 36770664 ~ 36775514 (+)
XLOC_037311 BX664716.2 non-coding downstream 1626450 36794384 ~ 36797834 (+)

Expression


Co-expression Network