G1817406


Basic Information

Item Value
gene id G1817406
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47729357 ~ 47730208 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079363
CGGTCTTTTCTCATTGAACTAAAAGTTGAATTCAGAAAACAACACCGTATCACTCTCGTGACtatttctcccctgttttcagggGCGTAACATCTGCAGCTAGGTATTCGGTATCATTgtacgcgaagaacgacaaccgccaaaacatcCATTCTACTACAACATGAATTGATGTCGttctgaactatcccctctaacagagagagagagagagagagagagagagaggatgaaaacTCCAACTGAAACTAACTTTacaacagcgatcaagacgactcactgagcgtaaatatatatattgattgcaattgttcccgaatgagtgagcgttcatgtgtaaaggattagcatttcaattgttattattaactctgtagtgacttcttagtcgacccccacttccccttttgtctaacaagccgccatgccagtTCAGCCCACTAGGACACATTCCCCTataatttcttgtaaccatatttactttgtttgtttctgtgtgca
>TU2079365
CGGTCTTTTCTCATTGAACTAAAAGTTGAATTCAGAAAACAACACCGTATCACTCTCGTGACtatttctcccctgttttcagCTAGGTATTCGGTATCATTgtacgcgaagaacgacaaccgccaaaacatcCATTCTACTACAACATGAATTGATGTCGttctgaactatcccctctaacagagagagagagagagagagagagagagaggatgaaaacTCCAACTGAAACTAACTTTacaacagcgatcaagacgactcactgagcgtaaatatatatattgattgcaattgttcccgaatgagtgagcgttcatgtgtaaaggattagcatttcaattgttattattaactctgtagtgacttcttagtcgacccccacttccccttttgtctaacaagccgccatgccagtTCAGCCCACTAGGACACATTCCCCTataatttcttgtaaccatatttactttgtttgtttctgtgtgca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079363 False 501 lncRNA 0.41 2 47729357 47730208
TU2079365 True 484 lncRNA 0.40 2 47729357 47730208

Neighbor

gene id symbol gene type direction distance location
LOC110501961 LOC106582505 coding downstream 93717 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 175748 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 468891 47170403 ~ 47260466 (-)
LOC110501994 hnmt coding downstream 625529 47086871 ~ 47103828 (-)
LOC110501995 hnmt coding downstream 668030 47042225 ~ 47061327 (-)
ptprna LOC106582506 coding upstream 3011 47733219 ~ 47834254 (-)
tmem198a LOC106582514 coding upstream 166849 47897057 ~ 47972131 (-)
LOC110501953 ihh coding upstream 327643 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 409553 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 775237 48505445 ~ 48645921 (-)
G1817380 NA non-coding downstream 17268 47683477 ~ 47712089 (-)
G1817376 NA non-coding downstream 51387 47677276 ~ 47677970 (-)
G1817368 NA non-coding downstream 83578 47644370 ~ 47645779 (-)
G1817353 NA non-coding downstream 113372 47615182 ~ 47615985 (-)
G1817352 NA non-coding downstream 114938 47614216 ~ 47614419 (-)
G1817416 NA non-coding upstream 20485 47750693 ~ 47751260 (-)
G1817448 NA non-coding upstream 110483 47840691 ~ 47840910 (-)
G1817451 NA non-coding upstream 122153 47852361 ~ 47852641 (-)
G1817460 NA non-coding upstream 139812 47870020 ~ 47877837 (-)
G1817479 NA non-coding upstream 191328 47921536 ~ 47922173 (-)
G1817287 LOC106582526 other downstream 255973 47471294 ~ 47473384 (-)
G1816929 NA other downstream 327310 47400985 ~ 47402047 (-)
G1816841 NA other downstream 502711 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 1888375 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3055469 44673447 ~ 44673888 (-)
G1817668 NA other upstream 538579 48268787 ~ 48291496 (-)
G1817836 NA other upstream 728818 48459026 ~ 48460040 (-)
G1817968 NA other upstream 739390 48469598 ~ 48470035 (-)
G1818059 NA other upstream 897156 48627364 ~ 48627846 (-)

Expression


Co-expression Network