G1817526 (bin1)


Basic Information

Item Value
gene id G1817526
gene name bin1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47988167 ~ 48010646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079511
TTGGTGATCTTGATGCCCCCGTCCTTTCCTTTCTTCCCCTTATTGGTAGAAGAGTGGTTGTGTCTGGCGCTGTCGTAGTCCACAAGCTTCCTGTCACGCTTTGCAATACGagaCTTAATATCAGGGAACTGTCCAAGATACGTGTCCATAGATATCAAAGCATTATCCACCAGCTTCTGATGGAAGTCGGTCCACAGAACATCAGTGTCCTCAACGATGGAGTCCAAGTCATCTTTGCCGTACCACTCCGGCTCGTACATGTCAGACAGACACTCCTGAAGGTTCTTGGAGGATTCGTGCATCgctgtagacagacagagagacagg
>TU2079512
TTGGTGATCTTGATGCCCCCGTCCTTTCCTTTCTTCCCCTTATTGGTAGAAGAGTGGTTGTGTCTGGCGCTGTCGTAGTCCACAAGCTTCCTGTCACGCTTTGCAATACGagaCTTAATATCAGGGAACTGTCCAAGATACGTGTCCATAGATATCAAAGCATTATCCACCAGCTTCTGATGGAAGTCGGTCCACAGAACATCAGTGTCCTGCAACCCGAAACAAGGAAGTCGACGTTAAATTACTGAAT

Function

symbol description
bin1 Enables several functions, including aspartic-type endopeptidase inhibitor activity; cytoskeletal protein binding activity; and enzyme binding activity. Involved in several processes, including T-tubule organization; negative regulation of amyloid precursor protein catabolic process; and positive regulation of astrocyte differentiation. Located in several cellular components, including axon; cytosol; and nucleus. Part of lipid tube. Colocalizes with cytoskeleton. Implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma.

NR:

description
PREDICTED: myc box-dependent-interacting protein 1 isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079511 False 327 lncRNA 0.49 3 47988167 48010646
TU2079512 True 250 lncRNA 0.46 2 48010233 48010646

Neighbor

gene id symbol gene type direction distance location
tmem198a LOC106582514 coding downstream 16036 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 153913 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 352527 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 434558 47476398 ~ 47553609 (-)
trpm2 LOC106582587 coding downstream 727701 47170403 ~ 47260466 (-)
LOC110501953 ihh coding upstream 47205 48057851 ~ 48064453 (-)
LOC110501956 itgav coding upstream 129115 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 494799 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 951566 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1459456 49470102 ~ 49480960 (-)
G1817479 NA non-coding downstream 65994 47921536 ~ 47922173 (-)
G1817460 NA non-coding downstream 110330 47870020 ~ 47877837 (-)
G1817451 NA non-coding downstream 135526 47852361 ~ 47852641 (-)
G1817448 NA non-coding downstream 147257 47840691 ~ 47840910 (-)
G1817416 NA non-coding downstream 236907 47750693 ~ 47751260 (-)
G1817540 NA non-coding upstream 19369 48030015 ~ 48030821 (-)
G1817541 NA non-coding upstream 20747 48031393 ~ 48034662 (-)
G1817543 bin1 non-coding upstream 29384 48040030 ~ 48080797 (-)
G1817549 NA non-coding upstream 64519 48075165 ~ 48076165 (-)
G1817593 NA non-coding upstream 118796 48129442 ~ 48130249 (-)
G1817287 LOC106582526 other downstream 514783 47471294 ~ 47473384 (-)
G1816929 NA other downstream 586120 47400985 ~ 47402047 (-)
G1816841 NA other downstream 761521 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2147185 45838750 ~ 45840982 (-)
G1814480 NA other downstream 3314279 44673447 ~ 44673888 (-)
G1817668 NA other upstream 258141 48268787 ~ 48291496 (-)
G1817836 NA other upstream 448380 48459026 ~ 48460040 (-)
G1817968 NA other upstream 458952 48469598 ~ 48470035 (-)
G1818059 NA other upstream 616718 48627364 ~ 48627846 (-)

Expression


Co-expression Network