Gene
RNA
| Item | Value |
|---|---|
| gene id | G1817543 |
| gene name | bin1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 48040030 ~ 48080797 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| bin1 | Enables several functions, including aspartic-type endopeptidase inhibitor activity; cytoskeletal protein binding activity; and enzyme binding activity. Involved in several processes, including T-tubule organization; negative regulation of amyloid precursor protein catabolic process; and positive regulation of astrocyte differentiation. Located in several cellular components, including axon; cytosol; and nucleus. Part of lipid tube. Colocalizes with cytoskeleton. Implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma. |
| description |
|---|
| myc box-dependent-interacting protein 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2079538 | False | 378 | lncRNA | 0.52 | 4 | 48040030 | 48080797 |
| TU2079534 | False | 274 | lncRNA | 0.51 | 2 | 48040527 | 48080797 |
| TU2079535 | False | 269 | lncRNA | 0.51 | 2 | 48040527 | 48080797 |
| TU2079536 | True | 249 | lncRNA | 0.50 | 2 | 48040527 | 48080797 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem198a | LOC106582514 | coding | downstream | 67899 | 47897057 ~ 47972131 (-) |
| ptprna | LOC106582506 | coding | downstream | 205776 | 47733219 ~ 47834254 (-) |
| LOC110501961 | LOC106582505 | coding | downstream | 404390 | 47628880 ~ 47635640 (-) |
| cfap65 | cfap65 | coding | downstream | 486421 | 47476398 ~ 47553609 (-) |
| trpm2 | LOC106582587 | coding | downstream | 779564 | 47170403 ~ 47260466 (-) |
| LOC110501956 | itgav | coding | upstream | 58964 | 48139761 ~ 48220042 (-) |
| LOC110502188 | LOC106582504 | coding | upstream | 424648 | 48505445 ~ 48645921 (-) |
| LOC118943644 | NA | coding | upstream | 881415 | 48962212 ~ 48964633 (-) |
| LOC118943599 | NA | coding | upstream | 1389305 | 49470102 ~ 49480960 (-) |
| prkag3b | LOC106592041 | coding | upstream | 2042091 | 50122888 ~ 50243945 (-) |
| G1817541 | NA | non-coding | downstream | 5368 | 48031393 ~ 48034662 (-) |
| G1817540 | NA | non-coding | downstream | 9209 | 48030015 ~ 48030821 (-) |
| G1817526 | bin1 | non-coding | downstream | 29384 | 47988167 ~ 48010646 (-) |
| G1817479 | NA | non-coding | downstream | 117857 | 47921536 ~ 47922173 (-) |
| G1817460 | NA | non-coding | downstream | 162193 | 47870020 ~ 47877837 (-) |
| G1817593 | NA | non-coding | upstream | 48645 | 48129442 ~ 48130249 (-) |
| G1817545 | NA | non-coding | upstream | 55610 | 48136407 ~ 48137488 (-) |
| G1817597 | NA | non-coding | upstream | 72261 | 48153058 ~ 48153868 (-) |
| G1817601 | NA | non-coding | upstream | 88886 | 48169683 ~ 48169915 (-) |
| G1817609 | NA | non-coding | upstream | 118348 | 48199145 ~ 48199900 (-) |
| G1817287 | LOC106582526 | other | downstream | 566646 | 47471294 ~ 47473384 (-) |
| G1816929 | NA | other | downstream | 637983 | 47400985 ~ 47402047 (-) |
| G1816841 | NA | other | downstream | 813384 | 47225551 ~ 47226646 (-) |
| G1815615 | LOC106582489 | other | downstream | 2199048 | 45838750 ~ 45840982 (-) |
| G1814480 | NA | other | downstream | 3366142 | 44673447 ~ 44673888 (-) |
| G1817668 | NA | other | upstream | 187990 | 48268787 ~ 48291496 (-) |
| G1817836 | NA | other | upstream | 378229 | 48459026 ~ 48460040 (-) |
| G1817968 | NA | other | upstream | 388801 | 48469598 ~ 48470035 (-) |
| G1818059 | NA | other | upstream | 546567 | 48627364 ~ 48627846 (-) |
| G1818393 | NA | other | upstream | 1044717 | 49125514 ~ 49126117 (-) |
