G1817545


Basic Information

Item Value
gene id G1817545
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48136407 ~ 48137488 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079545
GAAGCTGTGTCTAcataggcagcccaattctgatatttttggACCAATCAGTTCGGGGGAAAAacatctgatgtgaaaagatctgatgtgtctgatcaaaagatcagaattgggctgaaGACGTAGCCTTAGTGCACTAGACTTTCAGTTTAATTAATTGCTGCAACAATGTGAATATGAGACAGCAATTATGATATGTGGTGTAACTCAGAGCGATAgttatttaataataatattgtAAGGTCTTTAAAGACACGGCATGATTGGTGTTAAAATTAGTTGGTATGGATACTGCAAGGTGTTGATAGCAGGACATacaatgggttgtatttacatatCAATACTTTGACGAATAATTAATTGATGTGTTGTTTCTGCTCTATAAAAAATGTAAGGCAGTTAATATATAACTAGGGATTTCAACTGTAATATGTTATTTTCCTACGGGTGTAGGTGTACGAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATCTctgtgtaaatgtaaaaaaaaatgttgtataAAATGACTTCCAAGAATGATTTTACCGATATTGGGTGATCATCACATTTGTTGTTCATATTAGAGTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGACTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAATCAAACAGTAGCACTTATTCCCTACTTCACCTGTTTCTTCTCACTTTTTGGTTGTATTATGTATCTTCATTTTGTGTGTTGTTCCATGGCAGGCGACACCTCACTTCGCTGTGAGCAGTGAATGGACTGGGGGACCGGTCCCTATTCAGACTTCCAGCTCTTCCATCCTCGGTCATATGTCTCTTTGGgttgtgtgttgtttttttttaaatgatggtAATGTATTCTTTTCCCACAAGAAACAAACATGTTTCTGGTTGAGCTTATTCTTTCATAAATGAAATG
>TU2079546
TTGGTATGGATACTGCAAGGTGTTGATAGCAGGACATacaatgggttgtatttacatatCAATACTTTGACGAATAATTAATTGATGTGTTGTTTCTGCTCTATAAAAAATGTAAGGCAGTTAATATATAACTAGGGATTTCAACTGTAATATGTTATTTTCCTACGGGTGTAGGTGTACGAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATCTctgtgtaaatgtaaaaaaaaatgttgtataAAATGACTTCCAAGAATGATTTTACCGATATTGGGTGATCATCACATTTGTTGTTCATATTAGAGTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGACTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAATCAAACAGTAGCACTTATTCCCTACTTCACCTGTTTCTTCTCACTTTTTGGTTGTATTATGTATCTTCATTTTGTGTGTTGTTCCATGGCAGGCGACACCTCACTTCGCTGTGAGCAGTGAATGGACTGGGGGACCGGTCCCTATTCAGACTTCCAGCTCTTCCATCCTCGGTCATATGTCTCTTTGGgttgtgtgttgtttttttttaaatgatggtAATGTATTCTTTTCCCACAAGAAACAAACATGTTTCTGGTTGAGCTTATTCTTTCATAAATGAAATG
>TU2079554
TTGGTATGGATACTGCAAGGTGTTGATAGCAGGACATacaatgggttgtatttacatatCAATACTTTGACGAATAATTAATTGATGTGTTGTTTCTGCTCTATAAAAAATGTAAGGCAGTTAATATATAACTAGGGATTTCAACTGTAATATGTTATTTTCCTACGGGTGTAGGTGTACGAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATctctgtgtaaatgtgtgtgtaggtgtacgAAAAATCACAAATCTctgtgtaaatgtaaaaaaaaatgttgtataAAATGACTTCCAAGAATGATTTTACCGATATTGGGTGATCATCACATTTGTTGTTCATATTAGAGTCACACTAACCAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGAGTCACACTAACCAAATCAAACAGTAACACAGGACTCACACTAACCAATCAAACAGTAGCACTTATTCCCTACTTCACCTGTTTCTTCTCACTTTTTGGTTGTATTATGTATCTTCATTTTGTGTGTTGTTCCATGGCAGGCGACACCTCACTTCGCTGTGAGCAGTGAATGGACTGGGGGACCGGTCCCTATTCAGACTTCCAGCTCTTCCATCCTCGGTCATATGTCTCTTTGGgttgtgtgttgtttttttttaaatgatggtAATGTATTCTTTTCCCACAAGAAACAAACATGTTTCTGGTTGAGCTTATTCTTTCATAAATGAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079545 False 1040 lncRNA 0.36 2 48136407 48137488
TU2079546 False 761 lncRNA 0.36 2 48136407 48137209
TU2079554 True 771 lncRNA 0.36 2 48136407 48137209

Neighbor

gene id symbol gene type direction distance location
LOC110501953 ihh coding downstream 71954 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 164276 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 302153 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 500767 47628880 ~ 47635640 (-)
cfap65 cfap65 coding downstream 582798 47476398 ~ 47553609 (-)
LOC110501956 itgav coding upstream 2273 48139761 ~ 48220042 (-)
LOC110502188 LOC106582504 coding upstream 367957 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 824724 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1332614 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 1985400 50122888 ~ 50243945 (-)
G1817593 NA non-coding downstream 6158 48129442 ~ 48130249 (-)
G1817543 bin1 non-coding downstream 55610 48040030 ~ 48080797 (-)
G1817549 NA non-coding downstream 60242 48075165 ~ 48076165 (-)
G1817541 NA non-coding downstream 101745 48031393 ~ 48034662 (-)
G1817540 NA non-coding downstream 105586 48030015 ~ 48030821 (-)
G1817597 NA non-coding upstream 15570 48153058 ~ 48153868 (-)
G1817601 NA non-coding upstream 32195 48169683 ~ 48169915 (-)
G1817609 NA non-coding upstream 61657 48199145 ~ 48199900 (-)
G1817610 NA non-coding upstream 64554 48202042 ~ 48202338 (-)
G1817636 NA non-coding upstream 114523 48252011 ~ 48252265 (-)
G1817287 LOC106582526 other downstream 663023 47471294 ~ 47473384 (-)
G1816929 NA other downstream 734360 47400985 ~ 47402047 (-)
G1816841 NA other downstream 909761 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2295425 45838750 ~ 45840982 (-)
G1817668 NA other upstream 131299 48268787 ~ 48291496 (-)
G1817836 NA other upstream 321538 48459026 ~ 48460040 (-)
G1817968 NA other upstream 332110 48469598 ~ 48470035 (-)
G1818059 NA other upstream 489876 48627364 ~ 48627846 (-)
G1818393 NA other upstream 988026 49125514 ~ 49126117 (-)

Expression


Co-expression Network