G1817663


Basic Information

Item Value
gene id G1817663
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48253192 ~ 48287549 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079711
ctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccaggggctgtatagtaaagtagtatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtataggaAAGTAATAtgatgtcaccagggcctgtatagcaAAGTAGCATGTCATCAGGGCCTGTATAGtcaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctttatagtaaagtaacaaGTCACCAGgacctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtagcaTGTCaacagggcctgtatagtaaagtagaatgtcaccagggcctgtatagtagagtaacatgtcaccaggacctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgctGTCACCAGgtcctgtatagtaaagtaacatgttgtctaaAGGGccagtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtataataaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgttgtctacAAGGCCAGTAAattaaagtaacatgtcaccagggcctgtatagtaaagtagcaTGTCTtcagggcctgtatagtacagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgttgtcaccaggtcctgtatagtaaagtaacatgttgtcaccaggtcctgtatagtaaagtaacatgttgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtataataaagtaacatgtcaccagggcctgtatagtaaagtaacatatcaccagggcctgtataggaaggtaacatgttgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtttagtaaaataacatgttgtcaccagggcctgtatagtaaagtaacatgttgtcaccagggcctgtataataaagtaacatgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgcaTAGGaaggtaacatgttgtcaccagggcctgtatagtaaagtaacatgtcaccagggcctgtttagtaaaataacatgttgtcaccagggcctgtatagtaaagtaacatgttgtaaccagggcctgtatagtaaagtaacattttGTTACACTAGAAAATAATTTCAGTGGCTTCTCCGCTGCTGGGAAACAAGGTATGCATCCCAAAGGATATTCCTATTCCCTCTGTGGTCCACTATTTATAACTAGAGTCCTATaggatcctggtcaaaagtactgcacttatTAAAAAGGGAAGTATGGTTCTATTTGGGATGTAAACCCAACAGTGATTTTGTGACATGTTACCATGGCGTTAGATATTCCATTCCGTAACAGATATTGGCTTCCTGTTCTGAAACTGGCACATGTAGCTACGTTATGGGATT

Function

NR:

description
PREDICTED: apolipoprotein B-100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079711 True 1910 lncRNA 0.42 3 48253192 48287549

Neighbor

gene id symbol gene type direction distance location
LOC110501956 itgav coding downstream 33150 48139761 ~ 48220042 (-)
LOC110501953 ihh coding downstream 188739 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 281061 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 418938 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 617552 47628880 ~ 47635640 (-)
LOC110502188 LOC106582504 coding upstream 217896 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 674663 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1182553 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 1835339 50122888 ~ 50243945 (-)
si:ch211-67e16.4 LOC106582542 coding upstream 2172545 50460094 ~ 50465680 (-)
G1817636 NA non-coding downstream 927 48252011 ~ 48252265 (-)
G1817610 NA non-coding downstream 50854 48202042 ~ 48202338 (-)
G1817609 NA non-coding downstream 53292 48199145 ~ 48199900 (-)
G1817601 NA non-coding downstream 83277 48169683 ~ 48169915 (-)
G1817597 NA non-coding downstream 99324 48153058 ~ 48153868 (-)
G1817677 NA non-coding upstream 7749 48295298 ~ 48298062 (-)
G1817688 NA non-coding upstream 21321 48308870 ~ 48310462 (-)
G1817701 NA non-coding upstream 39337 48326886 ~ 48328140 (-)
G1817705 NA non-coding upstream 52491 48340040 ~ 48342535 (-)
G1817714 LOC106581772 non-coding upstream 64473 48352022 ~ 48352261 (-)
G1817287 LOC106582526 other downstream 779808 47471294 ~ 47473384 (-)
G1816929 NA other downstream 851145 47400985 ~ 47402047 (-)
G1816841 NA other downstream 1026546 47225551 ~ 47226646 (-)
G1815615 LOC106582489 other downstream 2412210 45838750 ~ 45840982 (-)
G1817836 NA other upstream 171477 48459026 ~ 48460040 (-)
G1817968 NA other upstream 182049 48469598 ~ 48470035 (-)
G1818059 NA other upstream 339815 48627364 ~ 48627846 (-)
G1818393 NA other upstream 837965 49125514 ~ 49126117 (-)
G1818417 NA other upstream 878202 49165751 ~ 49166367 (-)

Expression


Co-expression Network