G1817705


Basic Information

Item Value
gene id G1817705
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48340040 ~ 48342535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2079777
GAATAATCCTGATCCCTGTGTGATGTGAGCGTGTCTTACCCTGTTACACAACCAGAGACTTAAACTACAAGCTGTCGATCACACTATTCACACCCTAAAGCTTGGTTGGGTAGTTTCCAAAACATTGAATGTTAGGTTTCTTAGATCGTTACTACTATGTACAGAGAGAGTTGGATATCAGATATGCGTAGCGACTCATCCAATTGCTTCAGCTCTGATATTTCCCCAGGGAACAGAATAGACAGAGgagaaattaaatcaaatcaaagtgtgtttgtcacgtgccccgaatacaaccggtgtagtagacctcacagtaaaatgctgaatacaacatgtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagaacctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaaaccttacagtgaaatacttacttacaggccctcaccaacagtgcaatttttaagttcAACATATACAGGGTAttgcggtacagagtcaatgtggagactatatacagggtattacggtacagagtcaatgtggaggctatatacagggtattacggtacagagtcaatgtggaggctatatacagggggtactgg
>TU2079780
atacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtaggtagaccttacagtgaaacgctgaatacaacaggtgtaggtagaccttacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaattgttgaatacaacaggtgtagtagaccttacagtgaaatgcttacttacaggctctaaccaatagtgcaaaaaaaaggtattaggtgaacattaggtaagtaaagaaataataacaacagtaaaaagactaaATAAAACTCTTgaactcccgatcacggccggttattATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2079777 False 732 lncRNA 0.41 2 48340040 48340847
TU2079780 True 360 lncRNA 0.38 2 48342100 48342535

Neighbor

gene id symbol gene type direction distance location
LOC110501956 itgav coding downstream 119998 48139761 ~ 48220042 (-)
LOC110501953 ihh coding downstream 275587 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 367909 47897057 ~ 47972131 (-)
ptprna LOC106582506 coding downstream 505786 47733219 ~ 47834254 (-)
LOC110501961 LOC106582505 coding downstream 704400 47628880 ~ 47635640 (-)
LOC110502188 LOC106582504 coding upstream 162910 48505445 ~ 48645921 (-)
LOC118943644 NA coding upstream 619677 48962212 ~ 48964633 (-)
LOC118943599 NA coding upstream 1127567 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 1780353 50122888 ~ 50243945 (-)
si:ch211-67e16.4 LOC106582542 coding upstream 2117559 50460094 ~ 50465680 (-)
G1817701 NA non-coding downstream 11900 48326886 ~ 48328140 (-)
G1817688 NA non-coding downstream 29578 48308870 ~ 48310462 (-)
G1817677 NA non-coding downstream 41978 48295298 ~ 48298062 (-)
G1817663 NA non-coding downstream 52491 48253192 ~ 48287549 (-)
G1817636 NA non-coding downstream 87775 48252011 ~ 48252265 (-)
G1817714 LOC106581772 non-coding upstream 9487 48352022 ~ 48352261 (-)
G1817727 NA non-coding upstream 24616 48367151 ~ 48367361 (-)
G1817740 NA non-coding upstream 36241 48378776 ~ 48379312 (-)
G1817765 NA non-coding upstream 49780 48392315 ~ 48396735 (-)
G1817773 NA non-coding upstream 67850 48410385 ~ 48410666 (-)
G1817668 NA other downstream 48544 48268787 ~ 48291496 (-)
G1817287 LOC106582526 other downstream 866656 47471294 ~ 47473384 (-)
G1816929 NA other downstream 937993 47400985 ~ 47402047 (-)
G1816841 NA other downstream 1113394 47225551 ~ 47226646 (-)
G1817836 NA other upstream 116491 48459026 ~ 48460040 (-)
G1817968 NA other upstream 127063 48469598 ~ 48470035 (-)
G1818059 NA other upstream 284829 48627364 ~ 48627846 (-)
G1818393 NA other upstream 782979 49125514 ~ 49126117 (-)
G1818417 NA other upstream 823216 49165751 ~ 49166367 (-)

Expression


Co-expression Network