G1818322


Basic Information

Item Value
gene id G1818322
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 49017069 ~ 49018937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2080553
TATACCACCACCAGTCTCTACACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGtccctataccaccaccaGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTAGTTATGTAGTTCTGTTCTTGTCTATATGTTCTGGATTATGTTGTGTTAaacagctaatg
>TU2080556
AGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTAGTCTCTATACCACCACCAGTAGTCTCTATACCACCAGTAGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACTACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCCCCGTACCACCACCAGTCTCTATACCACCACCAGTCCCCGTACCACCACCAGTCTCTATACCACCACCAGTCCCTATACCACCAC
>TU2080554
AGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTAGTCTCTATACCACCACCAGTAGTCTCTATACCACCAGTAGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACTACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCCCCGTACCACCACCAGTCTCTATACCACCACCAGTCCCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTGTACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCACCACCAGTCCCTATACCACCACCAGTCTCTATACCACCACCAGTCTCTATACCGCCAGTCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2080553 False 345 lncRNA 0.48 2 49017069 49018034
TU2080556 False 383 lncRNA 0.53 3 49017439 49018937
TU2080554 True 531 lncRNA 0.52 4 49017603 49018937

Neighbor

gene id symbol gene type direction distance location
LOC118943644 NA coding downstream 52436 48962212 ~ 48964633 (-)
LOC110502188 LOC106582504 coding downstream 371148 48505445 ~ 48645921 (-)
LOC110501956 itgav coding downstream 797027 48139761 ~ 48220042 (-)
LOC110501953 ihh coding downstream 952616 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 1044938 47897057 ~ 47972131 (-)
LOC118943599 NA coding upstream 451165 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 1103951 50122888 ~ 50243945 (-)
si:ch211-67e16.4 LOC106582542 coding upstream 1441157 50460094 ~ 50465680 (-)
si:ch211-67e16.3 LOC106582540 coding upstream 1452810 50471747 ~ 50484670 (-)
cd28 LOC100136275 coding upstream 1476130 50495067 ~ 50496991 (-)
G1818292 NA non-coding downstream 29622 48986271 ~ 48987447 (-)
G1818270 NA non-coding downstream 56956 48959913 ~ 48960113 (-)
G1818259 NA non-coding downstream 64898 48951804 ~ 48952171 (-)
G1818255 NA non-coding downstream 82052 48934141 ~ 48935017 (-)
G1818252 NA non-coding downstream 85372 48926194 ~ 48931697 (-)
G1818325 NA non-coding upstream 1006 49019943 ~ 49020178 (-)
G1818326 NA non-coding upstream 1449 49020386 ~ 49021206 (-)
G1818369 NA non-coding upstream 27645 49046582 ~ 49102422 (-)
G1818391 NA non-coding upstream 85886 49104823 ~ 49105363 (-)
G1818396 NA non-coding upstream 124380 49143317 ~ 49143584 (-)
G1818059 NA other downstream 389223 48627364 ~ 48627846 (-)
G1817968 NA other downstream 547034 48469598 ~ 48470035 (-)
G1817836 NA other downstream 557029 48459026 ~ 48460040 (-)
G1817668 NA other downstream 725573 48268787 ~ 48291496 (-)
G1818393 NA other upstream 106577 49125514 ~ 49126117 (-)
G1818417 NA other upstream 146814 49165751 ~ 49166367 (-)
G1818802 NA other upstream 698695 49717632 ~ 49719378 (-)
G1819189 NA other upstream 1190537 50137937 ~ 50219233 (-)
G1819250 NA other upstream 1282864 50301801 ~ 50305038 (-)

Expression


Co-expression Network