G1818543


Basic Information

Item Value
gene id G1818543
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 49379416 ~ 49385733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2080823
actctacctcatgtagtaaatagtgatgatgactctacctcctgtagtgaatagtgatgatgactctacctcctgtagtgaatagtgatgactctacctcctgtagtgaatagtgatgacgactctacctcctgtagtgaatagtgatgactctacctcctgtagtgaatagtgatgatgactctacctcctgtagtgaatggtgatgactctacctcctgtagtgaataccgatgatgactctacctcatgtagtgaatagtgatgatgactctacctcatgtagtgtgaatagtgatgatgactctaccttctgtagtgaatagtgatgatgactctacctcctgtagtgaatagtgattgctctacctcctgtagtgaatagtgatgatgactctacctcctgtagtgaatagtgatgatgactccaCCTCCTGTAGTGCATAGTGATGATGTCTCCACCTACTGTAGTGATTAGTGATggtgactctacctcctgtagtgaatagtgatgactctacctcatgtagtgattagtgatgatgactctacctcatgtagtaaatagtgatgatgactctacctcctgtagtgaatagtgatggtgactctacctcctgtagtgaatagtgatgactctacctcatgtagttattagtgatgatgactctacctcctgtagtgaatagtgatgactctacctcctgtagtgaatagtgatgactctacctcctgtagtaaATAGCGATAAAGACTCTACCTCATGtagtgtgaatagtgatgatgactttaccttctgtagtgaatagtgatgatgactctacctcctgtagtgaatagtgatgactctacctcctgttgtgaatagtgatgactctacctcctgtagtgaatagtgatgatgactccacctcctgtagtgaatagtgatgactctatctcctgtagtgaatagtgatgatgactctatctcctgtagtgaattgtgatgactctacctcctgtagtgaatagtgatgatgactctatctcctgtagtgaatagtgatgactctacctcctgtagtgaatagtgatgacctCCTCATGTAGtaaatagtgatgatgactctacctcctgtagtgaatagtgatgatgactctacctcctgtagtgaatatagtgatgatgactctacctcctgtagtgaatagtgatgactctacctcatgtagtgaatagtgatgactctacctcctgtagtgaatagtgatgatgactctacctcctgttgtgaatagtgatgatgactctacctcctgtagtgaatatagtgatgacgactctacctcctgtagtgaattgTGATGACTCTACTtcatgtagtgaatagtgatgatgactctacctcctgtagtgaatggTGATGACTCTAcatcctgtagtgaatagtgatgactctacctcatgtagtgaatagtgatgatgactctacctcctgtagtgaatggtgatgactctacctcctgtagtgaataccgatgatgactctacctcatgtagtgaatagtgatgatgactctacctcatgtagtgtgaatagtgatgatgactctaccttctgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2080823 True 1607 lncRNA 0.41 2 49379416 49385733

Neighbor

gene id symbol gene type direction distance location
LOC118943644 NA coding downstream 414783 48962212 ~ 48964633 (-)
LOC110502188 LOC106582504 coding downstream 733495 48505445 ~ 48645921 (-)
LOC110501956 itgav coding downstream 1159374 48139761 ~ 48220042 (-)
LOC110501953 ihh coding downstream 1314963 48057851 ~ 48064453 (-)
tmem198a LOC106582514 coding downstream 1407285 47897057 ~ 47972131 (-)
LOC118943599 NA coding upstream 84369 49470102 ~ 49480960 (-)
prkag3b LOC106592041 coding upstream 737155 50122888 ~ 50243945 (-)
si:ch211-67e16.4 LOC106582542 coding upstream 1074361 50460094 ~ 50465680 (-)
si:ch211-67e16.3 LOC106582540 coding upstream 1086014 50471747 ~ 50484670 (-)
cd28 LOC100136275 coding upstream 1109334 50495067 ~ 50496991 (-)
G1818528 NA non-coding downstream 12816 49364739 ~ 49366600 (-)
G1818519 NA non-coding downstream 23935 49355198 ~ 49355481 (-)
G1818513 NA non-coding downstream 29432 49349715 ~ 49349984 (-)
G1818486 NA non-coding downstream 71320 49307785 ~ 49308096 (-)
G1818478 NA non-coding downstream 82973 49296175 ~ 49296443 (-)
G1818550 NA non-coding upstream 14224 49399957 ~ 49400366 (-)
G1818555 NA non-coding upstream 18865 49404598 ~ 49405120 (-)
G1818559 NA non-coding upstream 22451 49408184 ~ 49408424 (-)
G1818640 NA non-coding upstream 120159 49505892 ~ 49506560 (-)
G1818647 NA non-coding upstream 131718 49517451 ~ 49518194 (-)
G1818417 NA other downstream 213049 49165751 ~ 49166367 (-)
G1818393 NA other downstream 253299 49125514 ~ 49126117 (-)
G1818059 NA other downstream 751570 48627364 ~ 48627846 (-)
G1817968 NA other downstream 909381 48469598 ~ 48470035 (-)
G1817836 NA other downstream 919376 48459026 ~ 48460040 (-)
G1818802 NA other upstream 331899 49717632 ~ 49719378 (-)
G1819189 NA other upstream 823741 50137937 ~ 50219233 (-)
G1819250 NA other upstream 916068 50301801 ~ 50305038 (-)

Expression


Co-expression Network