XLOC_037434


Basic Information

Item Value
gene id XLOC_037434
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49749336 ~ 49754453 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075213
gtagaggtaATGCTTGACAAatgatgaattcactagatgctaatgcttagtaaatgattcctagtatgtagttattataaagtgttaccacattttTTAGCACACCCAGGTGTTTCATTTTAACATTTGGCTTCAAATGTATtatgttaaaacaattaaattgtatttattgatgGATGATGGTTTGGTTTAAAAACGTGCAAATGCGAAGTGACGCTGACCCATAGTATGAAGGCAACACATTAAAATAAGAATAGCACTCCCTTGAGGTTTGTTACCGCCATAGCagatatttaaagggacagttcactcaagaCATCAAAACTGTGATTTGCTCAGCTCAATGTCATTCAAAGCCTGTGACGTTCTTTCTAATATGGGATATAATAGAAGGTATTTTTTAAACTAACAAACACTGAAAAGATTCTTCTTGAAAACGTCGGGAAGCATTTGCATTTACCTACTGGAACAAAAGTATATTCCTGGCCTTAGGCTCGTGCAATGTTTCTTGTAATTTCAAAAGTTCTAGTTTTGAGCAGAAATGTGGATAGAACTTTTCTATGTATCTGTGTCagtggtgcaaaaaaaaaaaaaaagaaaactgaaaaaagaTAGTTGCTGTTAGTGTTCTGAAGTAAGTGTATATCTAAATGTTTGATAAaagcatgttttatttttgtttgttttttttagctcTCATTGCTGGTTTATGGTTTTGTAAGAGTTTGATGTActgtaaaaagagaaaataatactGTTGCGTTTTCGTACACATTCTTCATGCTTCTAAAGAGTTGGTGAAAGCATGAAAACGGCTCTTAAAATGTGTGCTGTTCATTTGCCTTTGCTTACAAAACCAAAACCATGATATTTAAGTTGTGAACACGATACATTTCCTCAATATGATTGCACTTTTTTCCATTGGCTGAATTGTAACCAATCGTTACCTGAGCACTGAGGGGGGGCGGGGCTACCTGGTACCGTGCCATGACTATGGCTGTGTTCGGAATGGAATACTTGCATACTACTTAGTGAATACTGGATAGTATGCACTCTAGGTACTACTTAAATACCTCTTTGATATTTGGCAGTGGAAACAGTCGCTCAAATTACTCAGATGCACTGCACTTTTGGATACAGTATAgaaacacatacactacctgacaaaagtcttgtcgttttTAGagcaacttgacttctagttgatcattgggaaaagtggcagaaggtggatttttctgatgaatcatctgttgatctgcatcccaatcatcacaaacactgtagaagaCCTACTGGAGCCTGCATGGACGCAAGACTCTCACAGAAACcagtcaagtctggtgaagacaaatcatggtttggggttacattatgTACAGGGGTGTGCGAGAagtctgcaacatcaacagcctgaggtatcgagacatttgtgctgcccattacattacaaaccacaggagagggcaagttcttcagcaggatagcgctccttctcatacttcagcctccacaacaaagctcctgaaagcaaaaaagttcaaagattggccagcccagatACCAgtgtgaacattattgagcatgtcttggataagatggaggaggcattgaagatgaatccaaagactcttgatgaactctgggagtcctgcaaaatcgatttctttgccattccagatgactttattattaagtgatttgagtcagtgcagagatgtatggatgcagtcctccaagctcatgatggagtcagacacaatattcattctgtttccactgcagcatgactttatattctatactggacattacttCTATTGAgtgacttttgtcttagcaaagtcagaccttactgccctaacaaaataattaaaaatcaaggcatgatcatattttattttggtacaataagcgtaatctaggggcctttgcctttcatataagacacttctgatactaaatgatcaactagaagtcaagctattatctgctgttcctaaaacttgcataggcgacttttgtcaggtagtgtagtgcaTACTAGTATGTTAGCATGCTATTCCAAACACAGccttagattattttttataacatatcTTCAAGTTTTTAGGGGATATGTGAAGGTTTTTATTTTCAATGACACTAACAATGAAttaatctatttgtgtttgcTTGAAAAAGACCAATAGGAGACGgaaagttttaacagttttttccaGAAAGATTTAACTTTTTAAGCCAGATGAAAATGCTGTTTGTCTTATGAAACTCTTTGGGATTATACAGGGATTTCTGATGAAATGCACTTTGACTGCGAGTTTAAAAAGTCTAACATACAAAAAAACGAATATTAGCTGTGCGATACTTTAAATGCATCACACAACTGAAAGTATTGTATGGATGGAAACAGATGTTTTCTCAATTTATAGCGAAAGGAATATATTATGGCGTGATGTGAAAACATTCTCTCAATATCCATTTTGAGGGGAACAATTAACCTCATGGTTATTTAATTTTTGAAATGAGCTATGACTGAACAAATCATTCTGTGgagtaatttgttaagtgcaataGTTTATGTGAAACGCTGTATTAATTTAGCATCAGAATTCCTACCATTTTAAAGGGGACGTTCACACAAAAATTCTAATTTGGtcaaatttactcaccctcatcaGTATTTTTCCAAACCTAATGCAGATTTGTTCATTATCAAAATCTTCTTGATAGTTTAAAAGCACAGATGGGGTGTGTAAATAATACCAGGATTATAACTTGTGTGAAATGCAACCTTAAAGCACCGACGAGTTTATAGAAGAAGCCGTTTTTTAGCGCACAAACATTATGATGCATCTGTCAGTTTGTTTCTCCTCTTGATGGAACGAGAGGCATTGTCCAATCGAGAATGTCCCTTAATAAGCTCAAGTCAGGACAATCAAATGCCTTTTACGTCATCAACATTGTAGCGTGAACGAAAGAAGCAGATCTTTAAAGGTGAAGGGTGTCGTTTAGCACTTAATTGATCTTATAAGCTGAATTAAACCATGTATGAACACAAACTCCTCTTTGAGCTGTACTGACATAAGTTATCATTAAAAAAGTGTCATGCAACTAAAAATTCTGAATTATGGAAAGTCAAAACAAGGGATTTAATTGAAGTAAAAACAAGGATTGTGACATCAAAAGTTGAAAGCGACACAATGTTAAAAATTCTGGTCATTTCATGACAGCAGCAACAGAAATTGAGAACAATATTTAAGTTAGCGTTGTTAAGATATTtgcattttgtatttatataaagtGTTCATAAACTTGCAATGTCCCTACaagtaaatcattttaaacctaaaATTTTAAgggaacatttttaaattatgtaaaataaataaataaaaatacagcattGCAACAAACTTTTGCAAGTAATTTTAGTAAATACAATAGAATGAATAGCTATTACACTTATTGATGGaacgttatattaaaattgtcattttatttttaatttgaacttttttttaattaaaggacaagttttgtacaaaaaaaagggcaaaaatgcacaagaaaaaggtctaaattatgctaaaaaataaaacatcgctACAAAATCTTGGTCATTTTAGCAAAACTGTGGTTATACAAATGGAAGGCAATCCACAATAAATAGGAAAGTTTCAATTATGCTAAGAAAATACAACATTGCAACAACATTGTGCAAATCATTTTAGTAAAACTGTGGTTAAACAAATGGAAAGcattgcacaataaataaataaataaacaggtacTTGTTACACAATTATTACTGCCACTATctcaataataacatttttattttattttattttaagcctatttttaaaaaaggacGAGTCTGATTTTGTAATCGCATAAAATGTTCATTAACCTGCAATGTCCCTATCAAACaagttaaacattttaattgaaattgaCAAAAATGTACAAGGAAAGTTAAAACTAtgcttaaaaaaagttattttagtaaaaaaaaaaaactgtggttaTACCAATAGAAAGCAATGCACAACaaagttatttttaataaaggaTGAGTCAGATTTtgtattaatataaaatgtttactaACCTGCAATATCCCTATCAAACAAGTACAAGGAAAGtttaaattatgcaaaaaaaaaaaaaaagaagaagaaataaattgttgcatgttgtatttttttagcttaattTAAACTTTCCTTGTACATTTttgtcaatttagatttttttttatgtttgatagGCAAGTTAATGAAAGTTTTACATTAATACAAAACCAAACTCGtcctttattaaaaaataagcttcaaattaaataaaaaatgtattatagattataaaatgaaaagcaatgtacaataaacaaatagtttttattacaaaaacaatattacaattttaattttagttaaaatgttaagcttatttttaaagtcttttattaaaactgttgttATGCAAATAGAAAGcattacacaataaaaataaataaataaataaataaatcaatagttattacacttttattttagttattactCTAGATATTACTGGCACTTTCTCTATAATACTGTTTTAATTTTAAGGTTATTTTTAATAAAGGACgagtttgatttttttaaacagaattcatctcataattttgactttttgtttcttTCAACTTGTTGATATCACAATAGCTTTACTCTCATCATTTTGACTGTCTCATAATTAAGACTTTTTTATATCAAAATtttagaacaaataaaaaatatatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0003008 system process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0043292 contractile fiber cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075213 True 4818 lncRNA 0.32 2 49749336 49754453

Neighbor

gene id symbol gene type direction distance location
XLOC_037433 CSRNP3 coding upstream 3912 49659114 ~ 49745424 (+)
XLOC_037432 stk39 coding upstream 697332 48943471 ~ 49052004 (+)
XLOC_037431 NA coding upstream 871987 48869896 ~ 48877349 (+)
XLOC_037430 NA coding upstream 890933 48845578 ~ 48858403 (+)
XLOC_037429 spc25 coding upstream 913842 48819280 ~ 48835494 (+)
XLOC_037435 CABZ01075129.1 coding downstream 30867 49785320 ~ 49785437 (+)
XLOC_037436 NA coding downstream 114999 49869452 ~ 49885824 (+)
XLOC_037437 NA coding downstream 145051 49899504 ~ 49903932 (+)
XLOC_037438 slc38a11 coding downstream 246051 50000504 ~ 50032969 (+)
XLOC_037439 cobll1b coding downstream 283894 50038347 ~ 50171086 (+)
XLOC_037428 NA non-coding upstream 932217 48693432 ~ 48817119 (+)
XLOC_037427 BX927361.2 non-coding upstream 1061451 48682775 ~ 48687885 (+)
XLOC_037425 NA non-coding upstream 1367764 48380855 ~ 48381572 (+)
XLOC_037440 CU062479.1 non-coding downstream 334547 50089000 ~ 50090257 (+)
XLOC_037443 NA non-coding downstream 608075 50362528 ~ 50485507 (+)

Expression


Co-expression Network