LOC110503012 (LOC106611138)


Basic Information

Item Value
gene id LOC110503012
gene name LOC106611138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57499694 ~ 57540368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960877.1
AATGAATTTCCCCCCTCAATTTTTGAACTTTGAACTTGGGAGGAGTCGCTAGCCTCGGCGGTGTTTTACAGGTTTTCGGGTAGGCGAAGAATTAGCATTTACAAGGATTTGGACTGCATTTCAGGGAGGGCGAAGGCTGTCAGTCATCATGGCCACTTCGAAAGCCTATTTTAGTGAGCGAGCCAATGCTACTTCGTGATGAACCTGCAAGAGGTGCTTTTCTGATGCGTTTTGCTGGcgaggtggctaacgttagctagcctaaTAACATCCGGCTTTACCTCTCAATAAGATGATTAACGTTAGGTAGCCAACCTTTCCTACACGATACTGTTTTTCAGTCACAGGCACCAACTGTCATTTAACGTTAGACTAATAACGTTATTCATCTAGCTACTATACGTACTGTATTGGTTTTCTATCTAGCGCTATCTATTTTTCCAAAGCAATGGCTGCAGACCTGCAATCCAAATACACCAAATTGGCCCAGGAGTATTCTAAGCTCCGGGCCCAGAACCAAGTGTTGAAGAAGGGCGTGGTAGATGAGCAGGCTAGCTCCACCTCTCTGAAGGAGCAGATGAAGCAGCGAGAGCACAGCCTGAGGAAGGTGGAGCAGGAGATGGACAGTCTCTCCTTCAGGAACCAGCAGCTGGCTAAGAGAGTAGagctgctgcaggaggaactggctACCAGCCAAGCCAAGGGCCAGAAGAGCAAGAACAAAGGGGACTCCCCCTCCCAGCAGGGCTTGCAGCAGACCCAGAGTGTGTTTGATGAGGACCTGCAGAAGAAGATCCAGGAGAACGAGAGGCTTCACATCCAGTTCTATGAGGCCGATGAGCAGCACAGGCAGCAGGAGTCTCAGCTGAAGGTCCAGTtggaggagctggagagagaccgCGAACAGCACCAGGCCATAGTGGACGGACTCACCTCCAAATACATGGACACTATAGAGAGACTGCAGAGTGCCCAGGCCAGActagagGTGAAATCCCAGACTCTGGAGAGGGAATCTAATGAGTGCAGAGTTCAGACAGAGGAATGTCAGCAGCAGTTGAGGAAGTGTCAGTCAGAGCTCAACATACAGGTGAAACAGAGCAGTTGTGTCATCCAGGAGAAAGTGCCCTTCAACGACACCAAATTCAGTGACTACAACAGCCTCAATGTTCCACCACACAACAAAAGACACCAGttGAAGGCCCGAGACGTAGCAGGTCAGGCCCTAGGCTTCGTCCAGGACATAGTGGTGGCTCTGTTAAACTTCCACTCCTACACAGAGCAGAGGGTGCACATCTACCCCCTGGATTCCTCTATCGAACCCATCTCACCACTCAACCAAAAGTTCTCCCAGTATCTACATGAGAATGCAGCCTATGTGCGCCCCCTGGAGGAAGGACTAGTGCAACTACACCAGAGCATCACAGAGGACACAGTAACAGTACTGGAGACTGTGGGGAAACTGAAGGGCTTTGCTGATCATTTCACATCCTACACCCACTTTCTGCAGAAGATTCTACCATACCAGCTCAAAAGTCTGGAGGAAGAGTGCAGGGCTCCTTTGTGtacctcctctctcatctctaaGAACCTGGAGCTGCAGAGTGGCATGAAGAGAATCACGTCAGTGTTCGACAAACTACACAGCTACATCATCCTACTGGCCTTACCTAGTGTTCGACAGGACGCTATGCCCCAGAGCAGTTCCTCTGCTGTCTTCACCCAGCTGGCTGCCTGTCTACACAGTCTTCATGATGCCGTCAAAGagATGTCTAAGCACTACAGCCAGAAGGCCGGTCTGGAACAGCAGTTGCCTACAGTCACTCAGAAGCTCTGCACCACTAACGAGTGTCTGCTGGCTTCCCTGGGCATGCTCACCAACAGCACCGACAAGATTGCAACGTTCTTCAGCAACAACCTGGATTTCTTTACATCTTCGACAGGCTATGGTccgagagggggggtgggggccCTCAACCCCCTGCAGGCAGAGAGCATGCTGGGTAACAAGAAGAAGGCTTCTGACTACATGCAGGCCATCAGAAAGCCCAGAGCTGAGTCTGTTCCATACAGAGAGGCCCTGTTGAACCGCCGTGTTCTAACCAGCTCTACAGAGAGCAGACAGGGACTCACACAACAGGTGGTGGCGAGCCAGGAGAAGATCGCTCGTCTGGAGCAGGAGAAGGAGCACTGGCTGCTGGAGACCCAGCTGGGCAGGGTGAGGCTGGAGAAGGAGAGCCAACGCATCCAGGACTTGGAGACACAGCTCTCCTCTgccctgggaggaggaggaggcagcccAGCCTCAGCCCTCTCCCTGGGTCTGGGCAGCCCAGCACTCACCAGCCTGGATGATGGcgagctggaggagagaggagtagggaaGGACGCTATGATAAGCACCAGTCTGGTTGGCATGTTGACCACAACTCCTACCAACGAGGAAgtgggagatgaggaGTCCAGAGAACAGCTGATTAAGACTCACTACATGGCCAGAGTAGGAGAACTCACCACACAGCTACAGGTCTCTGACAGCAAGGCTGTTAACTTCCATGCTGAGtGTCGAGCCCTGGCCAAGCGTCTGGCCTTGGCAGAGAAGTCACGGGAGACACTGACTGAGGAAGTCAAATTGGCTAATCAGAACATCACACGTCTGCAGGATGAGCTTGCCACGACCAAGAGGAGTTACAAGGAACAACTTAGTATGATGAGCGACCACCTGTGCAGCATGAATGAGACTCTcagcaaacagagagaggagattgaCATACTCAAACTGAGCAGCAAGGGAAACTCCAAACTCCTAAAGAAGGGTCGGTAGGAAATTAGTCTATTGGGGAAACTGGCTCCATTTTGGATCAGCAGCGCACCCTTAACTGAGAGAAGGGCTTGACTATGGAACCCCCACCCACTACAGCCCTGCCAGCTCCATACCACCAAGATGGAGGACCCTGTTAGACTTCTCCATCAGAGGGAGGCTATTGGGGAGGGGTCTCTGATACCACTCTGCTTAAAGGAATTGTGTTTCTGATTGACACAGATAATGACTTTACGTGTCAAGTGCTTCCCAGTGTGTGGCGGAAGCAGCTGCTTGACCCTTTGCACTTTGGTTTGTGGGAGGAAGTGGAAAATGTAATGGAAAGATTATATATTTTTCCTCCCCCCCACCAACTAGTCAGGTCATGGATGCTGACTACAGGGAATGAAGACCACCTGGCCCTGATGGgtagtgtgtctcttctctctgtgctaAACGTGGAAATGACGGCAATTTGAAATATTCATTCATCAAATTGCTCTTAAGTGGGAGGAGGATATCATGTGAGCAAGTCAAGTGTTAAATTGTGTGCCTGACTGGCTGTCTGGGTTGTTGTCTTTGTCTAATAGGGGGACTGTAGACTGTCATGCCAGGCTTTGAGAGGGACTGCTAATTATTATAACTTCATTTTATATTTGAACTATTTTTAGATCCAATGAAAGATTATTTGTGCAAAATTGTGACTTGAGGGACTATGTTCATTATATTTACCACATTTTACTTGAAGGGCTGCCCCAGATGAAATGAATCAATGagtgacatttgatttgatactagCCTTGGATGCCCAGGCTTCGCTCTTTAGTGGAGGCCTAAGACCGAGGCTAGACACACACTTCCATACATTCCCTTAAACCTGGATTCCTTGACGGTGAATCAGCCACGTCTGTTtgtgatattacaacaacaaagaagttaggatttgttatttatttttacaacGCTCCTCACCTCCGGTTTGTTAACAAAACAAGAACTGCCGTGGGGTGGACAGTAGCGCTGTTTCCCCTACTGAGAATTCCATCTTTATCTAGATGTCCCATCTGTCCTCGAACGGATGGAAGAATCTGACAGAATGACAATGACATGGAATAGATCTGACCCGATTACCCAATCAATTCTGACATGACAGATCTGTTCCACACGTTACATTTCTATTTGAACTAAATGATCTGTGATGTTGCACAAGGTAGAGTTCATAAAatggtgtctgtctgtaatgtttctCTAGCAGTTGTAACACGAAAGTGTGTATGGATGTGCACTGAGGAGATCTATGCTTGTgttccaaatgacatcctattccttacaaagtgcactactttggaccactgCCTTACGGGCCCTGGTCCAATGTaatggactatatagggaataatgtggtgccatttgggacacagcatgTCGCACCACAGTCTTCAAACCCTTGCATCATGTATGGAGAGAAGGGTTAATGTGAATATAATACATTATTGTACCGTGTACTTTAACAGAAATATACAAAAAAAGAAAGGCATTCGTTAAAGTTTTCCCATAACTATTTGCCATGATGACCCAATGAAATTACTAgtcgatgatcaatggaaaagagcagaaacacaaactaatCAATCACTCACCTGCATTTAATACTTGATTATTGGGTCCCAGAGAACTGAAAATATTTGCCTTTTGCAAGGCAATACACACACAGGTCTGCTCTTTTGAACCTTCTGTAGACTCATGGTTTGTGTACCCATTACAATTGTATTATCAGCGTGTTGGCAAAGCTAAAGTAGTCTACCCCTCGTCTGACAGTGTAGTGACTAATCTAACAGTTCACAATTAAcagcagggttgtgttcattagggcacaccataGCTAAACTTTTAACAATAGAAAATGAAAGTCCAGTTAGTACGTTGCTGTTTCACTCAGTTTTTGAACATTTTCTTCCATTTTGTACCTCCTGAAAACAACCCTGTATGCTTATTGCTTTTGTGTTCCAGTGACATTTATAGTGTGGCCAATAAAATGAATAATCCTA

Function

NR:

description
protein phosphatase 1 regulatory subunit 21-like

GO: NA

KEGG:

id description
K17562 PPP1R21, CCDC128, KLRAQ1; protein phosphatase 1 regulatory subunit 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960877.1 True 4848 mRNA 0.48 21 57499694 57540368

Neighbor

gene id symbol gene type direction distance location
LOC118943926 NA coding upstream 100257 57379129 ~ 57399437 (+)
LOC110503004 LOC106611018 coding upstream 656219 56829056 ~ 56843475 (+)
LOC110503003 LOC106611055 coding upstream 670962 56812404 ~ 56828732 (+)
LOC118943924 NA coding upstream 789728 56701366 ~ 56709966 (+)
LOC110503001 LOC106611028 coding upstream 798710 56613066 ~ 56727194 (+)
LOC110503013 NA coding downstream 4907 57545275 ~ 57550796 (+)
LOC110503040 LOC106579579 coding downstream 30378 57570746 ~ 57588495 (+)
LOC118943835 NA coding downstream 1324247 58864615 ~ 58865931 (+)
LOC110503019 LOC106611219 coding downstream 1796095 59336463 ~ 59345077 (+)
LOC118943836 NA coding downstream 2040731 59581099 ~ 59581875 (+)
G1883863 NA non-coding upstream 3547 57495920 ~ 57496147 (+)
G1883850 NA non-coding upstream 25462 57473996 ~ 57474232 (+)
G1883849 NA non-coding upstream 26299 57473168 ~ 57473395 (+)
G1883848 NA non-coding upstream 28052 57471348 ~ 57471642 (+)
G1883843 NA non-coding upstream 39835 57459441 ~ 57459859 (+)
G1883879 NA non-coding downstream 18692 57559060 ~ 57559268 (+)
G1883881 NA non-coding downstream 21368 57561736 ~ 57562058 (+)
G1884093 NA non-coding downstream 49677 57590045 ~ 57590267 (+)
G1884095 NA non-coding downstream 52792 57593160 ~ 57593406 (+)
G1884099 NA non-coding downstream 56178 57596546 ~ 57596777 (+)
G1883457 NA other upstream 486476 57012037 ~ 57013218 (+)
G1882831 NA other upstream 956438 56533617 ~ 56543256 (+)
G1882830 NA other upstream 961211 56529795 ~ 56538483 (+)
G1881371 NA other upstream 2496022 55002782 ~ 55003672 (+)
G1885587 NA other downstream 1321846 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2183896 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2187378 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2209350 59749718 ~ 59786095 (+)
G1886561 NA other downstream 2243618 59783986 ~ 59787989 (+)

Expression


Co-expression Network