LOC110503040 (LOC106579579)


Basic Information

Item Value
gene id LOC110503040
gene name LOC106579579
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57570746 ~ 57588495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039135.1
agagacAGGGAGGACGTCAGGGAGGGACCATCAACAGCCTTTGTCTCTCACAGTCTGTTTCTTAGCGAGAAGAGAGACGGCTGGTCTTTAATGCTGAGGATCCCGGAGAAGAAAATACCGAATGTCGTCCCGACAGTGGGGCCCCATTTACCTGCGTCTGCTGTCTGGAGGGGTGCTCCAGATGTACTATGAGAAAGGACTGGAGAAGCCCTTCAAAGAGTTCCAGCTGCAGCCTCACTGCAGGTTTTCAGATCTCAAGCTGGAGAGCAACGGAGAGCCTCGCAAGATCCAGACAGTGAAGGTGGAGGACGTGTCTTACACAGAGAAGAAGCGCTACCACCACAAGctggAGGTGTCCCACAAGGCTGAGGTGGAGCAGCTGCTGAAATTTGGAACCACGGAATACGGCGACATGGAGGATCTGTTAGAGACCATGGAGGAGGAGATTCTTAGGCTGACTCCGCCCCTGTCGCAAAAACGGCACTACGAGGAACAGGAGATGACACTGCAGATCCCAGACCACCTCTGGGTGCAGCTGGACAAGgaCGGTGTGATAATGGATCGGGCAGCCATGACGAGGATCCACTGCCTGGCTTTCCTCAACGGACCAGGGGAGTGTTTCCTGGCTCTCAACGACCTAGGGCTCCTCCGCTTCGACGCCAGCTTCGGCTCTGAGGAGGGCTGGATGGAGATCAGTGACTGCCACTTCCACAAGTGCATCAATGACTTGGAGTTCCACAGGTCCCGGCTGCTCAAGTTCTCCCCTCCGGACGCCTGTAGAGTAGAACTGATGCGCTACAAGACGTTAGCCCTGGGATGTACTAACCTACCGTTCTCCGTCAAAGCCGTGGTGACTGTCCAAGGGGCCTATGTGGAACTCCAAGCCTTTCTCAACATATCAGCCGCCTTCCCGTCATTTACTGGAGTGTCGGAGACTGAGCCGCTCTACGAGAACGTTCTGATCCGTGTGCCGGTACCGGCGGACTGGGTGAAGGTGTCACGCACTGTGACGTTGCTAAGACGGAAGTCCCTGCCGGCCAGGATCAACCGGAACGCGTGTCTGGggacagtcagtgttgttgagtcaCAGCCGGTCATGCAAGTTACCGTGGGGACAGTCAAGTATGAGAATGTGTACTTGGCCATGGTGTGGAGGATCGACAGACTGCATGCTAAGAACATGGGTAAGGATTAAGAGGAATAAAAATCCCATACCTTCTCCTGTAAATTAGAGCTTGGTTCAGATCAGGAGATCCCCACTGACTGGTATCCGTTTGTCACGATGGAGTGTGAGATGGTAGGGGCTGTGGTCTCACAGACCAGAGTGACGTCACTGGGCACAGACAGTGACGTTCAGCCTCAGAAACATGTCACCGGTAGGACCCACTATCATTGTCAGCCGAAGCTCTACCTGTCCATCATAGATGATGTGATTGAGAGCATGCGGGAGGTGTTTCTGGATGAAGGACTGGAGGACCGTGTCCTTGATGACCTGAGACAGCTCTGGGAGTCAAAGATTATGCAGTCCAAAGCAGTGGATGGCTTGGCCCTCATGAAGAACACCATCAACTCATCCAACTTTGTGCTGCAGCTCCCTCCAAACTATGGACAGACTTTTACAAAACCTGCAGCCTCTATGGTGATCCCTGCAGGTCAACACGTCCAGAGTTTCACTGCTAAGAACAACGGTGGGACTCTGgccaccttctctcttcctcccgggATGACCTACCCAGTCCAGATCCCTGCAGGGGTCACACTGCAGACGGCCTCTGGCCAGCTTTATAAGGTCAATGTCCCAGTGATGGTGACCCAGACTCCAGCCGGTCATCACCATCTCTCTCAGGCCCAACCCAGGCAAGGGGTACCTGTAGTGGAGTGGAGAGATCCCAGCTCAGCTTCCCAGCAGTCAGCCACAGTGGTCCCTTCTACTGTCCTAAAGACCATGGCCCTTCCGAAGACTGAACCTTTTCCCCCACAGCCTGTGGCTCCTCCCAGAGCGGATCCTCAGACCACAGAGCAGAGGAGCCTGATTCCTCCGGTCCAGCCACCTAATGAGAAGCCTTTGCTACCCCAACCTGTGGTCCAGCCCCCAGTTCAGGAGAATAATCTTGTTCAGCAGCCACAGGTTCCTTCAGCTCAGGCAACCTTTTCTAGTCAGACTCCAGTGTCCTTCCAGCCCCCAGCCCAACCTCCATCTCACCCCCCTGAGAGCCCCTTCGACAGTGGTGATTTCACTCTGGATGGGATTGATTTTGACAGTCCACAGCCACTAGACATGAGCCTGTCCTCCGGCTCCGCCCACATGCCAAGCCTTCAGGTCAAGATGGAGACGACCCTGTCTGAAGGGTCAGGGTTTatgggtcaggggtcagagtttGAGGCCAGCGAGATGGTGAAACAGGAGGATCATGGAGGAGCGGTGGCTGATATGACAACCCACCTGGAGGGTCTACCTGTGGATGCTACCAAGCTGGAGATGGCCCTGTTGAAAGACTACAACTACAATGATGCTCTGGCAGACATCATCCAGCTGGACGGGCCTGCAGACAGCAGctctgaggaggtggaggagttgGAAGGAGGTGCGATGGGAGAAAATGAGTTCCTAGGAATGATGACTGTGGAGGCTCTCCAGGCCCTACAGGAGGTAGATGGCAGCAGTGATGATGGCATCTCCAGCTCCAGTGGTGACAGTGTGGGGATGGATGAAATCACAGTGGAAGAGGATCCTTTAAACTCTGGGGATGACGTGAGTGAGCAGGACATTCCTGATCTCTTTGACACTGACAATGTGATAGTGTGTCAGTATGATAAGATTCACCGCAGTAAGAACCGGTGGAAGTTCTATCTGAAGGATGGGGTGATGTGTTATGGAGGAAAGGACTATGTCTTCTCTAAGGCTGTCGGCGAGGCAGAGTGGTGACTGGGTTTTTGTTATGTTCCAATGTCCATACGAGAATAGTTCAGAGGCGAAGAGGGGTTTTTGTACAATACCTCTTGGGATGCAATGGTAGTACATTCTAAGTAGAATGCTAGTGTGAATATTGGAACAGAACCTTGGTCTGTATTTCACCCATGTGGATACAGCCTTGACTTAGTCTTAAATGTATCCAACGAGGCGCATAAAACATGAATATATTGAGAGAATAATATCATTTGAAGTTAATGGGGAAAACCACAGTTGTTCAGTGAGCTAGAACATACAATCTATGCAGGCTTCTAATCTGAAGAAAAATGTCTGGACGAGTAAAGAGTCCGTCCCACACGgcaacctgttccctatatagtgcactacttttcaccagccACCACAGTGCACAAAGGGCTTTTTGAGTTGTTAATTTTGTTTATGTaactatttatttatatttttgtatttgttgtgtAATGCCATTAAAGGAGCACTGAGCACTAAGTT

Function

NR:

description
PREDICTED: stonin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039135.1 True 3421 mRNA 0.52 16 57570746 57588495

Neighbor

gene id symbol gene type direction distance location
LOC110503013 NA coding upstream 19950 57545275 ~ 57550796 (+)
LOC110503012 LOC106611138 coding upstream 30378 57499694 ~ 57540368 (+)
LOC118943926 NA coding upstream 171309 57379129 ~ 57399437 (+)
LOC110503004 LOC106611018 coding upstream 727271 56829056 ~ 56843475 (+)
LOC110503003 LOC106611055 coding upstream 742014 56812404 ~ 56828732 (+)
LOC118943835 NA coding downstream 1276120 58864615 ~ 58865931 (+)
LOC110503019 LOC106611219 coding downstream 1747968 59336463 ~ 59345077 (+)
LOC118943836 NA coding downstream 1992604 59581099 ~ 59581875 (+)
LOC110503016 LOC106611257 coding downstream 2114899 59703394 ~ 59816421 (+)
LOC110503015 LOC106589751 coding downstream 2258616 59847111 ~ 59866775 (+)
G1883881 NA non-coding upstream 8688 57561736 ~ 57562058 (+)
G1883879 NA non-coding upstream 11478 57559060 ~ 57559268 (+)
G1883863 NA non-coding upstream 74599 57495920 ~ 57496147 (+)
G1883850 NA non-coding upstream 96514 57473996 ~ 57474232 (+)
G1883849 NA non-coding upstream 97351 57473168 ~ 57473395 (+)
G1884093 NA non-coding downstream 1550 57590045 ~ 57590267 (+)
G1884095 NA non-coding downstream 4665 57593160 ~ 57593406 (+)
G1884099 NA non-coding downstream 8051 57596546 ~ 57596777 (+)
G1884173 NA non-coding downstream 83382 57671877 ~ 57676345 (+)
G1884203 NA non-coding downstream 116939 57705434 ~ 57724679 (+)
G1883457 NA other upstream 557528 57012037 ~ 57013218 (+)
LOC110503001 LOC106611028 other upstream 843552 56613066 ~ 56727194 (+)
G1882831 NA other upstream 1027490 56533617 ~ 56543256 (+)
G1882830 NA other upstream 1032263 56529795 ~ 56538483 (+)
G1881371 NA other upstream 2567074 55002782 ~ 55003672 (+)
G1885587 NA other downstream 1273719 58862214 ~ 58864502 (+)
G1886557 NA other downstream 2135769 59724264 ~ 59736661 (+)
G1886558 NA other downstream 2139251 59727746 ~ 59736471 (+)
G1886560 NA other downstream 2161223 59749718 ~ 59786095 (+)
G1886561 NA other downstream 2195491 59783986 ~ 59787989 (+)

Expression


Co-expression Network