LOC110503015 (LOC106589751)


Basic Information

Item Value
gene id LOC110503015
gene name LOC106589751
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 59847111 ~ 59866775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581395.2
TCCTCACATCAGCTGTAATAAACACGTAGGGTAGGCGAACCCAATGCAACCCCCCCGAATGACGAGAATCATTTTGAATTTTCTCGATTACTCGcgtcctctcctccgtcctctcctcgcctccttttgAAACGGGAGAGGGTGAACTTTGACCAATTGAGAAAATGCCAAATAAAAGTGGCGTGTTGTCAGGTGGGTGTTCTGGCGGCGGGTGTTCCTATAATTAGATTGAAGGAGTTAGTTTGGGGACATAAGGACATCTCTCAATGCTCATTCTGATCAAGccttacagacagacagtttggAGACAACATTTCCGTCAGTGTCAGGACTGCTTTATCGCTGACAGAAAGGAACCAAAGCCAGGGACAACGGACAAGGTAGATGGGTCTGGTACAGTGGTTGAAGGGCCAATTTTTGTGTCACCTGATCATCTGCTATGGGTTCTTGGTCAGCGGTCTCCTGGTCAACCTATTACAGATCTGCACTCTGCCCCTCTGGCCAATCAACAAGCAGCTGGCCCGGCGGATCAACTGTAAACTGGGATATTCCCTCACCAGCCAGTCTGTGGCTCTCCTAGAGTGGTGGTCTGGCACTGAAGTAACTTTCTACACAGACCCAGCGGACTACCAAACCTACGGCAAAGAGAACGCCATCGTCGTCCTTAACCACAACTTTGAAATAGACTTTCTGTGTGGCTGGACCTTCTGTGACAGATTCGGGGTCCTTGGGGCCTCCAAATGTTTAGCCAAGAAAGAGTTGTCGTACCTGCCTGTGATTGGCTGGATGTGGTACTTCCTGGAAATGGTGTTTATTAAGAGGAAGTGGGAGGAGGATAAGAGGAGCTTTGTCCAGAGTCTTCAGAACCTACGGGATTACCCCGAGAACTTCTGGTTCCTGCTCCACTGTGAGGGAACACGCTTCACAGAGGAGAAGCATCAGATCAGTATGGAGGTGGCAGAGAAGAAAGGCCTGCCTAAACTCAAACACCACCTCCTGCCCAGGACCAAGGGCTTCTGGGTAGCCGTCCAGAACCTCCGAGGGACAGTTGCTGCGGTCTACTGTTGTACACTAAATTTCAGAAACAACGAAACACCAACCTTGCTGGGAGTTATCAACGGGAAAAAATATCATCCAGATTTATACATAAGGAGAATCCCTCTGGAGTCCGTACCAGAAGATGAGGCTGAATGTTCTTCCTGGCTTCACAAACTCTACCAGGAGAAGGACCAGTTCCAGGAGGACTACAGCCACACCGGGTGTTTCCCTGGCCCTGTAGTCACCCCTCCGCGTGGACCCTGGTCCCTGATCAACTGGATAGGCTGGACCTGCCTTCTCCTAtaccccctctacctcctcctggtCCAGCTGGTCCTCTCTGGGTCTATTCTCACCATACTGGCCACTGTGGCCTTCTGCTCTGCAGGACCCAGAAAATGGAGGCAGTGGGAGAACttattcaaCTACAGAGCGCTATGGATCCGTCTGCAGATGAATGTCCCAAGAGTACCGGTACACCCTTGTATGCCATGGATTAtgtatacctacagtatgttagcaAAAATAGTTTAAAAGTGACACATGTATAAACATTTTACAACTGGAGCAGGGCAACCCTGCTGGGGGTGCAGGCTTCTGTTCcagtactaacacacctgattcaatgtGTAAGTAGTTAATAATCAAGTGTGCTCCCCACTGTAGATCAGGGAGCAGTGgaggggagaacagctcataatTATGCCTGGAACTGAGCgactggaatggcatcaaacacatggaaaccatgtacttgataccattccactccagcTATTGCCATGAGCCTGTTCTCCCCAtttaaagtgccaccaacctccaTTGCAGTGGAGATGGACATTTCTTTTTCTTCGCCTGGCATTGTTTTAGTAACAACCGTTAACTTACATGTAAAGTTTAGACATTTTAGGAAGTAATCTTCAAAGAATCAACACTTTCATATAATTTCAAACGGTGCAAGTAAGCTGTGTTTAAACGTGTTTTAATTAAACTTTTTCAAGA
>XM_021581386.2
CAGCTGTAATAAACACGTAGGGTAGGCGAACCCAATGCAACCCCCCCGAATGACGAGAATCATTTTGAATTTTCTCGATTACTCGcgtcctctcctccgtcctctcctcgcctccttttgAAACGGGAGAGGGTGAACTTTGACCAATTGAGAAAATGCCAAATAAAAGTGGCGTGTTGTCAGGTGGGTGTTCTGGCGGCGGGTGTTCCTATAATTAGATTGAAGGAGTTAGTTTGGGGACATAAGGACATCTCTCAATGCTCATTCTGATCAAGccttacagacagacagtttggAGACAACATTTCCGTCAGTGTCAGGACTGCTTTATCGCTGACAGAAAGGAACCAAAGCCAGGGACAACGGACAAGATGGGTCTGGTACAGTGGTTGAAGGGCCAATTTTTGTGTCACCTGATCATCTGCTATGGGTTCTTGGTCAGCGGTCTCCTGGTCAACCTATTACAGATCTGCACTCTGCCCCTCTGGCCAATCAACAAGCAGCTGGCCCGGCGGATCAACTGTAAACTGGGATATTCCCTCACCAGCCAGTCTGTGGCTCTCCTAGAGTGGTGGTCTGGCACTGAAGTAACTTTCTACACAGACCCAGCGGACTACCAAACCTACGGCAAAGAGAACGCCATCGTCGTCCTTAACCACAACTTTGAAATAGACTTTCTGTGTGGCTGGACCTTCTGTGACAGATTCGGGGTCCTTGGGGCCTCCAAATGTTTAGCCAAGAAAGAGTTGTCGTACCTGCCTGTGATTGGCTGGATGTGGTACTTCCTGGAAATGGTGTTTATTAAGAGGAAGTGGGAGGAGGATAAGAGGAGCTTTGTCCAGAGTCTTCAGAACCTACGGGATTACCCCGAGAACTTCTGGTTCCTGCTCCACTGTGAGGGAACACGCTTCACAGAGGAGAAGCATCAGATCAGTATGGAGGTGGCAGAGAAGAAAGGCCTGCCTAAACTCAAACACCACCTCCTGCCCAGGACCAAGGGCTTCTGGGTAGCCGTCCAGAACCTCCGAGGGACAGTTGCTGCGGTCTACTGTTGTACACTAAATTTCAGAAACAACGAAACACCAACCTTGCTGGGAGTTATCAACGGGAAAAAATATCATCCAGATTTATACATAAGGAGAATCCCTCTGGAGTCCGTACCAGAAGATGAGGCTGAATGTTCTTCCTGGCTTCACAAACTCTACCAGGAGAAGGACCAGTTCCAGGAGGACTACAGCCACACCGGGTGTTTCCCTGGCCCTGTAGTCACCCCTCCGCGTGGACCCTGGTCCCTGATCAACTGGATAGGCTGGACCTGCCTTCTCCTAtaccccctctacctcctcctggtCCAGCTGGTCCTCTCTGGGTCTATTCTCACCATACTGGCCACTGTGGCCTTCTGCTCTGCAGGACCCAGAAAATGGAGGCAGTGGGAGAACttattcaaCTACAGAGCGCTATGGATCCGTCTGCAGATGAATGTCCCAAGAGTACCGGTACACCCTTGTATGCCATGGATTAtgtatacctacagtatgttagcaAAAATAGTTTAAAAGTGACACATGTATAAACATTTTACAACTGGAGCAGGGCAACCCTGCTGGGGGTGCAGGCTTCTGTTCcagtactaacacacctgattcaatgtGTAAGTAGTTAATAATCAAGTGTGCTCCCCACTGTAGATCAGGGAGCAGTGgaggggagaacagctcataatTATGCCTGGAACTGAGCgactggaatggcatcaaacacatggaaaccatgtacttgataccattccactccagcTATTGCCATGAGCCTGTTCTCCCCAtttaaagtgccaccaacctccaTTGCAGTGGAGATGGACATTTCTTTTTCTTCGCCTGGCATTGTTTTAGTAACAACCGTTAACTTACATGTAAAGTTTAGACATTTTAGGAAGTAATCTTCAAAGAATCAACACTTTCATATAATTTCAAACGGTGCAAGTAAGCTGTGTTTAAACGTGTTTTAATTAAACTTTTTCAAGA
>XM_036960907.1
AATAAACACGTAGGGTAGGCGAACCCAATGCAACCCCCCCGAATGACGAGAATCATTTTGAATTTTCTCGATTACTCGcgtcctctcctccgtcctctcctcgcctccttttgAAACGGGAGAGGGTGAACTTTGACCAATTGAGAAAATGCCAAATAAAAGTGGCGTGTTGTCAGGTGGGTGTTCTGGCGGCGGGTGTTCCTATAATTAGATTGAAGGAGTTAGTTTGGGGACATAAGGACATCTCTCAATGCTCATTCTGATCAAGccttacagacagacagtttggAGACAACATTTCCGTCAGTGTCAGGACTGCTTTATCGCTGACAGAAAGGAACCAAAGCCAGGGACAACGGACAAGATGGGTCTGGTACAGTGGTTGAAGGGCCAATTTTTGTGTCACCTGATCATCTGCTATGGGTTCTTGGTCAGCGGTCTCCTGGTCAACCTATTACAGATCTGCACTCTGCCCCTCTGGCCAATCAACAAGCAGCTGGCCCGGCGGATCAACTGTAAACTGGGATATTCCCTCACCAGCCAGTCTGTGGCTCTCCTAGAGTGGTGGTCTGGCACTGAAGTAACTTTCTACACAGACCCAGCGGACTACCAAACCTACGGCAAAGAGAACGCCATCGTCGTCCTTAACCACAACTTTGAAATAGACTTTCTGTGTGGCTGGACCTTCTGTGACAGATTCGGGGTCCTTGGGGCCTCCAAATGTTTAGCCAAGAAAGAGTTGTCGTACCTGCCTGTGATTGGCTGGATGTGGTACTTCCTGGAAATGGTGTTTATTAAGAGGAAGTGGGAGGAGGATAAGAGGAGCTTTGTCCAGAGTCTTCAGAACCTACGGGATTACCCCGAGAACTTCTGGTTCCTGCTCCACTGTGAGGGAACACGCTTCACAGAGGAGAAGCATCAGATCAGTATGGAGGTGGCAGAGAAGAAAGGCCTGCCTAAACTCAAACACCACCTCCTGCCCAGGACCAAGGGCTTCTGGGTAGCCGTCCAGAACCTCCGAGGGACAGTTGCTGCGGTCTACTGTTGTACACTAAATTTCAGAAACAACGAAACACCAACCTTGCTGGGAGTTATCAACGGGAAAAAATATCATCCAGATTTATACATAAGGAGAATCCCTCTGGAGTCCGTACCAGAAGATGAGGCTGAATGTTCTTCCTGGCTTCACAAACTCTACCAGGAGAAGGACCAGTTCCAGGAGGACTACAGCCACACCGGGTGTTTCCCTGGCCCTGTAGTCACCCCTCCGCGTGGACCCTGGTCCCTGATCAACTGGATAGGCTGGACCTGCCTTCTCCTAtaccccctctacctcctcctggtCCAGCTGGTCCTCTCTGGGTCTATTCTCACCATACTGGCCACTGTGGCCTTCTGCTCTGCAGCTACAGAGCGCTATGGATCCGTCTGCAGATGAATGTCCCAAGAGTACCGGTACACCCTTGTATGCCATGGATTAtgtatacctacagtatgttagcaAAAATAGTTTAAAAGTGACACATGTATAAACATTTTACAACTGGAGCAGGGCAACCCTGCTGGGGGTGCAGGCTTCTGTTCcagtactaacacacctgattcaatgtGTAAGTAGTTAATAATCAAGTGTGCTCCCCACTGTAGATCAGGGAGCAGTGgaggggagaacagctcataatTATGCCTGGAACTGAGCgactggaatggcatcaaacacatggaaaccatgtacttgataccattccactccagcTATTGCCATGAGCCTGTTCTCCCCAtttaaagtgccaccaacctccaTTGCAGTGGAGATGGACATTTCTTTTTCTTCGCCTGGCATTGTTTTAGTAACAACCGTTAACTTACATGTAAAGTTTAGACATTTTAGGAAGTAATCTTCAAAGAATCAACACTTTCATATAATTTCAAACGGTGCAAGTAAGCTGTGTTTAAACGTGTTTTAATTAAACTTTTTCAAGA
>XM_021581394.2
AAACACGTAGGGTAGGCGAACCCAATGCAACCCCCCCGAATGACGAGAATCATTTTGAATTTTCTCGATTACTCGcgtcctctcctccgtcctctcctcgcctccttttgAAACGGGAGAGGGTGAACTTTGACCAATTGAGAAAATGCCAAATAAAAGTGGCGTGTTGTCAGGTGGGTGTTCTGGCGGCGGGTGTTCCTATAATTAGATTGAAGGAGTTAGTTTGGGGACATAAGGACATCTCTCAATGCTCATTCTGATCAAGccttacagacagacagtttggAGACAACATTTCCGTCAGTGTCAGGACTGCTTTATCGCTGACAGAAAGGAACCAAAGCCAGGGACAACGGACAAGATGGGTCTGGTACAGTGGTTGAAGGGCCAATTTTTGTGTCACCTGATCATCTGCTATGGGTTCTTGGTCAGCGGTCTCCTGGTCAACCTATTACAGATCTGCACTCTGCCCCTCTGGCCAATCAACAAGCAGCTGGCCCGGCGGATCAACTGTAAACTGGGATATTCCCTCACCAGCCAGTCTGTGGCTCTCCTAGAGTGGTGGTCTGGCACTGAAGTAACTTTCTACACAGACCCAGCGGACTACCAAACCTACGGCAAAGAGAACGCCATCGTCGTCCTTAACCACAACTTTGAAATAGACTTTCTGTGTGGCTGGACCTTCTGTGACAGATTCGGGGTCCTTGGGGCCTCCAAATGTTTAGCCAAGAAAGAGTTGTCGTACCTGCCTGTGATTGGCTGGATGTGGTACTTCCTGGAAATGGTGTTTATTAAGAGGAAGTGGGAGGAGGATAAGAGGAGCTTTGTCCAGAGTCTTCAGAACCTACGGGATTACCCCGAGAACTTCTGGTTCCTGCTCCACTGTGAGGGAACACGCTTCACAGAGGAGAAGCATCAGATCAGTATGGAGGTGGCAGAGAAGAAAGGCCTGCCTAAACTCAAACACCACCTCCTGCCCAGGACCAAGGGCTTCTGGGTAGCCGTCCAGAACCTCCGAGGGACAGTTGCTGCGGTCTACTGTTGTACACTAAATTTCAGAAACAACGAAACACCAACCTTGCTGGGAGTTATCAACGGGAAAAAATATCATCCAGATTTATACATAAGGAGAATCCCTCTGGAGTCCGTACCAGAAGATGAGGCTGAATGTTCTTCCTGGCTTCACAAACTCTACCAGGAGAAGGACCAGTTCCAGGAGGACTACAGCCACACCGGGTGTTTCCCTGGCCCTGTAGTCACCCCTCCGCGTGGACCCTGGTCCCTGATCAACTGGATAGGCTGGACCTGCCTTCTCCTAtaccccctctacctcctcctggtCCAGCTGGTCCTCTCTGGGTCTATTCTCACCATACTGGCCACTGTGGCCTTCTGCTCTGCAGTGTCGGTTGGTGTGCGCTGGATGATTGGACAGACTGAGATTAAGAGAAGCTCCAGCTATGGGGTCCCACTTAACTGAGATGGCCTTACAACTGCAAGATCCTTCCCAGCTCCCAGGGACCACTCACATTACCAATCTCATCCCTACAGCACAGTTCACCTCCAGCAGATAATTAATTCCAAAGAAAGAATGTTGCTGGTCAGAGATGGCGTTGCATTCAACTCCAGTACGACAATAAGGGTGGAAGGTGCTTCAGCAGTCTTCCTCTTGCCAGTACATGAATAAACTGCACCTAAACACATACGTGCATTCAAAGTATTTAGACCCCATGACCTTTTCCAgattattacattacagccttattctaaaatggattaaatactcATCGGGtctttggtcacctccctgaccaatgcccttctcccccgattggtcagtttgactgggcggccatctctaggaagagtcttggtggttccaaacttccattttaagaatggaggccaatgtgttcttggggatcttcaatgctgcagaaatgttttggtacccttccccagatttgtgcctcgacacaatcctgcctcggagctctacggacaattcctttgacctcatgtctttttttttgcactgtcaactgtggaactttatatagacgggtgtgcctttccaaatcatgtccaaccaatttaccacaggtggactcaatcaAGTTGAAATagctcaaggattatcaatggaagtTCTGAATCTGGTATGTTTTCCCTTTAATTATGGGCAATTgtgagttttttatttttatttcattcaGTTTAGAATAaggtaacgtaacaatgtggaaaaagtcaaggggtctgactgCACTGTAGGTTCAGGGCATGCATCTATGTCTTTGTCCTTGTCCTTGCCATACATCAACATGTATGACTAAAGTGTGATGTGTTAAATGCACTCgattcaaaatgtaactttttttgcACATATGAGATTCTGAAGTACCAGATAAGCCCACTTCAGTTGCTTATCTGATGCTGGCTTTAGTTTCAGCAGTGTGTACGTACAAACGCAGGCAGTCCCTTCTATTAAGCTCCCGTGTAAACATTACCATGTTATGTTTGATGAATCTAGGATATGACAAACTAATCTCACACAGCATTTCTTAACGATttaatattgtttgtacatagCAAACACTAGGAGCAGCAGAGGACCAGAAAGTGTGTGTGCATTCAGCAGCAGGGAGTGAGATCGGACCTTTGTCTCTCTCCTCGGTTGGATATGCTTCAGTTCCGTGGCTCTCCAATCGGGACACACCTGTCTGACTGTCAACCAATCAGTGCTGCCCATATCCTCTACATCCCAAATTGCATCCTCttccatatagtgcactatattagggaatagggtgtcagttGGGACAAACTTAATCTCCAACTGTAAAAATGGGATCCTCAGAAAGGCGAAATAAAAACGATTTTAAAAC
>TU2158164
CATGGCTAGCTGCGTTTTGCTACCACCAAAAACTTCGGGAAGATTGCCCATTATTTCGTTTTTCTAAGGACCCAGAAAATGGAGGCAGTGGGAGAACttattcaaCTACAGAGCGCTATGGATCCGTCTGCAGATGAATGTCCCAAGAGTACCGGTACACCCTTGTATGCCATGGATTAtgtatacctacagtatgttagcaAAAATAGTTTAAAAGTGACACATGTATAAACATTTTACAACTGGAGCAGGGCAACCCTGCTGGGGGTGCAGGCTTCTGTTCcagtactaacacacctgattcaatgtGTAAGTAGTTAATAATCAAGTGTGCTCCCCACTGTAGATCAGGGAGCAGTGgaggggagaacagctcataatTATGCCTGGAACTGAGCgactggaatggcatcaaacacatggaaaccatgtacttgataccattccactccagcTATTGCCATGAGCCTGTTCTCCCCAtttaaagtgccaccaacctccaTTGCAGTGGAGATGGACATTTCTTTTTCTTCGCCTGGCATTGTTTTAGTAACAACCGTTAACTTACATGTAAAGTTTAGACATTTTAGGAAGTAATCTTCAAAGAATCAACACTTTCATATAATTTCAAACGGTGCAAGTAAGCTGTG

Function

NR:

description
1-acyl-sn-glycerol-3-phosphate acyltransferase delta-like isoform X10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581395.2 False 2040 mRNA 0.48 10 59847111 59862494
XM_021581386.2 False 2027 mRNA 0.48 10 59847120 59862494
XM_036960907.1 False 1983 mRNA 0.48 9 59847127 59862494
XM_021581394.2 False 2888 mRNA 0.47 9 59847130 59866775
TU2158164 True 650 lncRNA 0.43 2 59861436 59862462

Neighbor

gene id symbol gene type direction distance location
LOC110503016 LOC106611257 coding upstream 30690 59703394 ~ 59816421 (+)
LOC118943836 NA coding upstream 265236 59581099 ~ 59581875 (+)
LOC110503019 LOC106611219 coding upstream 502034 59336463 ~ 59345077 (+)
LOC118943835 NA coding upstream 981180 58864615 ~ 58865931 (+)
LOC110503040 LOC106579579 coding upstream 2258616 57570746 ~ 57588495 (+)
LOC110503042 kcnk1 coding downstream 95440 59962215 ~ 59972534 (+)
slc35f3b slc35f3 coding downstream 145930 60012705 ~ 60174129 (+)
col9a1b LOC106560234 coding downstream 458514 60325289 ~ 60371061 (+)
LOC110516668 lmbrd1 coding downstream 779291 60646066 ~ 60907352 (+)
LOC118943928 LOC106577473 coding downstream 1626882 61493657 ~ 61522049 (+)
G1886620 NA non-coding upstream 23486 59823287 ~ 59823625 (+)
G1886615 NA non-coding upstream 29421 59817424 ~ 59817690 (+)
G1886570 NA non-coding upstream 48113 59798622 ~ 59798998 (+)
G1886562 NA non-coding upstream 58481 59768276 ~ 59788630 (+)
G1886556 NA non-coding upstream 124307 59716295 ~ 59722804 (+)
G1886645 NA non-coding downstream 109373 59976148 ~ 59976670 (+)
G1886685 NA non-coding downstream 119560 59986335 ~ 59987088 (+)
G1886689 NA non-coding downstream 123552 59990327 ~ 59990543 (+)
G1886728 NA non-coding downstream 217916 60084691 ~ 60084897 (+)
G1886731 NA non-coding downstream 223011 60089786 ~ 60090030 (+)
G1886561 NA other upstream 59122 59783986 ~ 59787989 (+)
G1886560 NA other upstream 61016 59749718 ~ 59786095 (+)
G1886557 NA other upstream 110450 59724264 ~ 59736661 (+)
G1886558 NA other upstream 110640 59727746 ~ 59736471 (+)
G1885587 NA other upstream 982609 58862214 ~ 58864502 (+)
G1887835 NA other downstream 1410000 61276775 ~ 61277763 (+)
G1888298 NA other downstream 2059971 61926746 ~ 61927857 (+)
G1888544 NA other downstream 2697750 62564525 ~ 62565083 (+)

Expression


Co-expression Network