XLOC_037485 (rab9a)


Basic Information

Item Value
gene id XLOC_037485
gene name rab9a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 54686686 ~ 54704498 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073695
GCAGCCAATAGGCTCGCAGGAGTGTGGCACCATCCGCGATCCGAGGAAGAGCCCATAAACTCGTCATGTTTGGGTTTATtgcttgttttctttctttttatcgCTTTCAGATTCGCTGTTATTGAAGCCCGATGTGCTCAAAGGCATCTACAGGACAGAGAGGAGCAcatgaccgactgactgactgaccgcaGCTCAGAGAAACTACtATTCTGAAGGATGATTTATTTGAGGCAGTAAAGTTCACAGGACGAGGATTACAGCCATGTCATCTAAATCATCTCTCCTGAAAGTGATTCTGCTGGGTGATGGCGGCGTGGGCAAAAGCTCGCTCATGAACCGATACGTCACCAACAAGTTTGATGCTCATCTCTTCCACACCATCGGTGTGGAGTTCCTCAATAAAGACTTGGAGGTGGACGGCCGTACTGTGACCCTGCAGATCTGGGATACGGCCGGGCAGGAGCGCTTCCGTAGCCTCCGCACGCCTTTCTACCGCGGCTCCGACTGCTGCCTACTGACCTTCAGTGTGGATGACAGCCAGAGCTTCCACAACCTGGTCAACTGGAAAAAAGAGTTCATTTATTACGCCGACGTCAAGGAGCCCGAAAGCTTCCCGTTTGTGGTTCTGGGAAATAAACTGGACGTTTCGGAGCGTCAGGTGAGCAGTGAAGAAGCGCAGGAGTGGTGCATGGAGAGCGGTGGATACCCGTATTTCGAGACCAGTGCAAAAGATGCCACTAATGTCGCGGTTGCGTTCGAGGAGGCGGTGAGAAGAGTGCTGTCTCTGGAGGACAGACACGAGCATCTGATTCCTACAGACACTGTGAATCTGCACAGGAAACCGCGCAGCGCTACACAGTGCTGTTAATGGAGGAGAGGCAACTAGCTATTTgaatgggatagttcacacacTGAGATATTAAAGTCTACTCACTTGTTCA
>TCONS_00073696
AGGATTACAGCCATGTCATCTAAATCATCTCTCCTGAAAGTGATTCTGCTGGGTGATGGCGGCGTGGGCAAAAGCTCGCTCATGAACCGATACGTCACCAACAAGTTTGATGCTCATCTCTTCCACACCATCGGTGTGGAGTTCCTCAATAAAGACTTGGAGGTGGACGGCCGTACTGTGACCCTGCAGATCTGGGATACGGCCGGGCAGGAGCGCTTCCGTAGCCTCCGCACGCCTTTCTACCGCGGCTCCGACTGCTGCCTACTGACCTTCAGTGTGGATGACAGCCAGAGCTTCCACAACCTGGTCAACTGGAAAAAAGAGTTCATTTATTACGCCGACGTCAAGGAGCCCGAAAGCTTCCCGTTTGTGGTTCTGGGAAATAAACTGGACGTTTCGGAGCGTCAGGTGAGCAGTGAAGAAGCGCAGGAGTGGTGCATGGAGAGCGGTGGATACCCGTATTTCGAGACCAGTGCAAAAGATGCCACTAATGTCGCGGTTGCGTTCGAGGAGGCGGTGAGAAGAGTGCTGTCTCTGGAGGACAGACACGAGCATCTGATTCCTACAGACACTGTGAATCTGCACAGGAAACCGCGCAGCGCTACACAGTGCTGTTAATGGAGGAGAGGCAACTAGCTATTTgaa

Function

symbol description
rab9a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be located in phagocytic vesicle membrane. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB9A (RAB9A, member RAS oncogene family).

GO:

id name namespace
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0032482 Rab protein signal transduction biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko05162 Measles
ko05132 Salmonella infection
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-060825-293 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be located in phagocytic vesicle membrane. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB9A (RAB9A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000045027

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073695 False 944 mRNA 0.51 5 54686686 54704498
TCONS_00073696 True 645 mRNA 0.53 2 54695981 54704452

Neighbor

gene id symbol gene type direction distance location
XLOC_037484 egfl6 coding upstream 5213 54629993 ~ 54681473 (+)
XLOC_037483 NA coding upstream 244179 54442087 ~ 54442507 (+)
XLOC_037482 drd1b coding upstream 267378 54417141 ~ 54419308 (+)
XLOC_037481 NA coding upstream 311778 54373091 ~ 54374908 (+)
XLOC_037480 NA coding upstream 384296 54294578 ~ 54302390 (+)
XLOC_037486 ofd1 coding downstream 11938 54716436 ~ 54743987 (+)
XLOC_037487 glra2 coding downstream 187578 54892076 ~ 54940881 (+)
XLOC_037488 mospd2 coding downstream 280039 54984537 ~ 55051256 (+)
XLOC_037489 gpr143 coding downstream 351812 55056310 ~ 55090829 (+)
XLOC_037490 ANOS1 coding downstream 449916 55154414 ~ 55217191 (+)
XLOC_037473 NA non-coding upstream 777801 53901989 ~ 53908885 (+)
XLOC_037467 NA non-coding upstream 1676627 53008689 ~ 53010059 (+)
XLOC_037491 NA non-coding downstream 517984 55222482 ~ 55236013 (+)
XLOC_037492 NA non-coding downstream 542860 55247358 ~ 55257642 (+)
XLOC_037493 CABZ01113123.1 non-coding downstream 543702 55248200 ~ 55248314 (+)
XLOC_037496 NA non-coding downstream 911012 55615510 ~ 55619694 (+)
XLOC_037497 NA non-coding downstream 956570 55661068 ~ 55661584 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000201_00576577_00577506 NA coding CI01000201 null 576577 ~ 578901 (+)