XLOC_037592 (dcaf17)


Basic Information

Item Value
gene id XLOC_037592
gene name dcaf17
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 3498377 ~ 3519717 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073828
ATGTGCGCGCTCCCGTCTCCACGTGCACAGCGCCCCCCTGCGTGCACCCGCACCAGTAAAAACAGCTGTGCTTTACTGGCTTCAAGATATAATGGATCCTGCTCCAACGACTTTGGCAGATTATTGGCATCAAACCTTAAGATCCTGAGAAACATCATCCTTAAAGATGATACAGAATTCGTCAAAGTGTGGAGCAAGACTTCCAAGTCCCTCATCTCTTATGAAAGTGGACGGATATACTTTGATAATTACAGGTGTTGTTACAGCAGCCTTTTGCCGGAGCCAGAACTGCTGTATGAACTCCCCAGAACTCCCAAAACAGAGAAGATTGAAGACGCGTTATTGTGCCAGTGTCCTCTGGAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAGATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAGGCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAGGTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAGTTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATGAGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTGGCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAACATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAATCAGGCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAGACGTTCAGAATGGTGAAGTATGAAGACGAGCTTGATCTGCTGGCTGTGGTGGACATCACTCACGCTGAAGATGAAGGACAGGCTCGTCTTCGCCTGCATGACAATAAAACAGGCGCTTTAATGAAGAGAGTTCCTCTGGAGGAGCCCTGGGATGTGACCTACAGTCACGAGGTGTACTTTGACAGAGACACCATTATTCACACTGTCCAGGAGAAGAACAACAGCTTCTGTTGCCATGTTTATAAAATGAAGAGACCAGCTTCAGACCAACCATAATGAGCATGCTTCATATCATGtagaccaggggcctgtttcagtaaggaggttcaaacaactcagagtttaaacttgaactctgagttgatttaccgagagattaaaaactcagagttttcggtttcagaacagctgatctgagttgggtcaatcaacttcgagtagaccaactcagagttaagcgcgcacaccgtgactttaaaaaggcattatcaatggagcgcagacattaagagtgactatggcaatatcttataaaagagatcaccatttctttctccagctgaacttgatgttctcatgcaaagttatagcaaatatgagcgtatatatttgaaaagaagcaaccatcagtgaagaagagacagcgtgggaaaacagctgctcaagttaatgcctaatttaactttttaagtatttaaatatttaagtataataaaataagtaatgtaatttgtgacgtttatagattttttttgaaactttcttttatacatttattagttttaaatgatttaacagtgcacttgtgtgtctgccttttttattgatcaagtgataggttaatataacatttagaaggtaagcagtactaaaaataatttttagaaagaataataatcccattaatctagttacagtgcatgtcgaaggtgaatttaatttaattatttatttaaaaaagataagCCATTTTCGTAGtttttctgtgtgtgactaaaatgtaggcaatagctatgtttccatccaaatatattacataaatttatgtgcaaaactggatattgcataaaagatgcgaataaaattccatccaacgagtgaaagagaaaaaaatagtcacttcctgataaaactggcaccaaatatcaacagtaaaaacagactttactgtggtagaagaagctgcgtcaattaattctttatttagcctaattaatgtacttgcccctcgatgtcagaagacaatgctgaaacacaaggaacacgtgggggcgtctgaagccatgagacacggagactcttgacacgcaccagacgttctgaggtaattaataatatacactaatactgaaacagttaaggcattttagaatgactaaaacaatatttaagacatgttacagtgtgctcagcctgctggtttgtccatttacacacattttcattatcatatgatcatgatctttttttaatgtacatactgtaatttgttcagtaaaagtgtttccatcgtagtttatgcgcacattttctatcaaataaaagtttatcctactcagttatgcgcgtttttatgcatattttaaaaagttatttgcatcatgacgtttctatcaatcgtttttatgcacatatccaaaatgagctctaaaataggtgggtggaaacgtaaggctaaggcgagaaataccgcttcatcttaaaaaaaggggaggagacagagagaaactctgagtttagagaataaaacctgcttctgaccaggttagattcacagagtaagttaccacggtaactgactctgagttaaagttacctctctttcagaaacaggcttgacttaccctgctttctcgagtttaacaaacctgccattttgaaacggaaaacctagagtttctctcatttcagggttaaaatactctgagttttcagttaacctcctttctgaaacaggccccaggtcctggaggtctggtgtcctgcagattttagcttgcctcaacacacctgcatggatgtttctagaaagcctagtaagagcttgattagctagcccaggtgtgtctgattggggttggaactaaactttgcaggacacacaggcccaggaccgagtttggacatgcctgatgtAGACAAAACAACGTAATAAAAGATGTCTGTTATAATGATGTCATGTTATAATGTAGATATTCTCCTATGTCGATGTTTGACAACTCGAGAGcagaaactatatatatttttgtattatgaaGCATGAATCTTTCACACTGTCATTTGTATTGGAGAAATTGCTGATCAGCGAGCATTCATGCATTGACATCAATGACCTGACACGGTTCTGTTTACTAATTTATATCAGTATGCAAACATTAACTCGTAACTTTCTTAATAAAGACAGAATTTTGTGACAGATACTCTCTTGTCATGATTGTGAAACCAAGTTACGTTGTATAACACTGTGGTTGCTTACAAAACTgtcgaggaaaaaaaaaaaaaaagaaaagcagccTGTGTTTCATTTAGTGAGCTGACAGACTTCATGAGTTGCCTACTTAGACAGCATGAGGTGTCATAAGTCTAAGCAGAGAGACATTTTGAACAAAGATTATATTTTAGCTagagatgtacagttgaagtcagaattattagcccccttgaattattagccccctgcttattttttccccaatttctgtttaacggagagcacaTTTTTTTCagcccatttctaaacataatagttttaataactcatctctaataactgatttattttctctttgccatgatgacagtaaataatattttacttgatatttttcaagacacttctatacagcttaaagtgacatttaaaggcttaactaggttaattaggttacctaggcaggttagggtaattaggcaagttattgtataacagtggtttgttctgtagattattgagaaaaaaatatagcttaaaggggctaataattttgtccctaaaattgtgtttaaaaaattaaaaactgcttttattctagccgaaataaaacaaataagactttctccagaagaaaaaatattatcagacatactgttaaagttttcttgctctgttaaacatcatttggg
>TCONS_00073829
CTGAATACTCATTCAAAGCAACTAAATCACCACGAAGCCAGACAAGTATAAGCTTTAATGCAGTATTATCTGTCATTTTACCACGCTTTAAAACTGCTTTATGTGAGGATTTATGTCGACAAGAGAAATGCTAGCAGTTACTAGCTTACTAGCAAATGATGGCACCTGAAAATATCTATCATTTTAATTAGAGCAACAAGAACAAATGTGTGTGTTCAAATTCGACTATTTAAGTAATCAGACGCTAACTTTTCTGCAATATTTTCGTTAATGCTAACTGATGCTAAGACTATGACTTTGAGCAACgctattaattattgttaattgtTAATTAACGTTAGTGTTTGTATAAAAGGATTTTAACCAGCAACTCACTTATACGCCATTTCCGAAGGTTATTCCTCAGAAATAGTGGTAGTCAAGTGTATTTTTATGAGTTGTGTGAGAAGAATCGTCCGTCCTCTATGTGCGCGCTCCCGTCTCCACGTGCACAGCGCCCCCCTGCGTGCACCCGCACCAGTAAAAACAGCTGTGCTTTACTGGCTTCAAGATATAATGGATCCTGCTCCAACGACTTTGGCAGATTATTGGCATCAAACCTTAAGATCCTGAGAAACATCATCCTTAAAGATGATACAGAATTCGTCAAAGTGTGGAGCAAGACTTCCAAGTCCCTCATCTCTTATGAAAGTGGACGGATATACTTTGATAATTACAGGTGTTGTTACAGCAGCCTTTTGCCGGAGCCAGAACTGCTGTATGAACTCCCCAGAACTCCCAAAACAGAGAAGATTGAAGACGCGTTATTGTGCCAGTGTCCTCTGGAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAGCAGATCGTTAGGTTGGGACTCTTCACAGGAGACATTTTACGTCAAATCCGTTCAATGCAAACAGACTGCTCTAGAACGACAGGCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAGGTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAGTTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATGAGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTGGCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAACATTCTCAAGATCATGGCGGAAACAGGATGTGACTGGAAGTATGAGATCATCACAGATTTCTCCATCACCGCTGCTCGTGACAGTAATGCCTCTCAGGTGATTGTGACCTCTTCTGGCCGTACAGTTAAAAGGAGATTTCAGATGTTAGACGATGACCCTGCACAAGAGACGTTCAGAATGGTGAAGTATGAAGACGAGCTTGATCTGCTGGCTGTGGTGGACATCACTCACGCTGAAGATGAAGGACAGGCTCGTCTTCGCCTGCATGACAATAAAACAGGCGCTTTAATGAAGAGAGTTCCTCTGGAGGAGCCCTGGGATGTGACCTACAGTCACGAGGTGTACTTTGACAGAGACACCATTATTCACACTGTCCAGGAGAAGAACAACAGCTTCTGTTGCCATGTTTATAAAATGAAGAGACCAGCTTCAGACCAACCATAATGAGCATGCTTCATATCATGtagaccaggtcctggaggtctggtgtcctgcagattttagcttgcctcaacacacctgcatggatgtttctagaaagcctagtaagagcttgattagctagcccaggtgtgtctgattggggttggaactaaactttgcaggacacacaggcccaggaccgagtttggacatgcctgatgtAGACAAAACAACGTAATAAAAGATGTCTGTTATAATGATGTCATGTTATAATGTAGATATTCTCCTATGTCGATGTTTGACAACTCGAGAGcagaaactatatatatttttgtattatgaaGCATGAATCTTTCACACTGTCATTTGTATTGGAGAAATTGCTGATCAGCGAGCATTCATGCATTGACATCAATGACCTGACACGGTTCTGTTTACTAATTTATATCAGTATGCAAACATTAACTCGTAACTTTCTTAATAAAGACAGAATTTTGTGACA
>TCONS_00073830
ACTCATTCAAAGCAACTAAATCACCACGAAGCCAGACAAGTATAAGCTTTAATGCAGTATTATCTGTCATTTTACCACGCTTTAAAACTGCTTTATGTGAGGATTTATGTCGACAAGAGAAATGCTAGCAGTTACTAGCTTACTAGCAAATGATGGCACCTGAAAATATCTATCATTTTAATTAGAGCAACAAGAACAAATGTGTGTGTTCAAATTCGACTATTTAAGTAATCAGACGCTAACTTTTCTGCAATATTTTCGTTAATGCTAACTGATGCTAAGACTATGACTTTGAGCAACgctattaattattgttaattgtTAATTAACGTTAGTGTTTGTATAAAAGGATTTTAACCAGCAACTCACTTATACGCCATTTCCGAAGGTTATTCCTCAGAAATAGTGGTAGTCAAGTGTATTTTTATGAGTTGTGTGAGAAGAATCGTCCGTCCTCTATGTGCGCGCTCCCGTCTCCACGTGCACAGCGCCCCCCTGCGTGCACCCGCACCAGTAAAAACAGCTGTGCTTTACTGGCTTCAAGATATAATGGATCCTGCTCCAACGACTTTGGCAGATTATTGGCATCAAACCTTAAGATCCTGAGAAACATCATCCTTAAAGATGATACAGAATTCGTCAAAGTGTGGAGCAAGACTTCCAAGTCCCTCATCTCTTATGAAAGTGGACGGATATACTTTGATAATTACAGGTGTTGTTACAGCAGCCTTTTGCCGGAGCCAGAACTGCTGTATGAACTCCCCAGAACTCCCAAAACAGAGAAGATTGAAGACGCGTTATTGTGCCAGTGTCCTCTGGAAAATGTGCTACCTAATGCCTCAGAGCAGAAATCATGTCTGTTGACTCTGACGGCTAACAACTGGTTATATCTGTTGTCGGCGGACACTGGAGAAACACTGCAGCGGGTCTACCTCTCCTCTCGTTTCAAGTTCAGGCTGGTGTTGATAATAACATCCTCATGCGCGTGGCTGCATTTCAAGTGTTTCCACTGCAGCTTGTTGGAATGCTGGAGATAAATAAAAAGGTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAGTTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATGAGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTGGtgcctcttctttttttttatttaaatgtatttttatcgAATGTGCAAAAACGTATCGGAAAATTATattgaataataagataatatcCGTCACTCATATTGTTTGAATCCTGACtcttaaatgaaaaattataataaaaataataaatttaaggTGGTCTATTCaaataatggactaagctgaaggaaaatcaatgattgaattaagtaaacaaa

Function

symbol description
dcaf17 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleolus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Human ortholog(s) of this gene implicated in Woodhouse-Sakati syndrome. Orthologous to human DCAF17 (DDB1 and CUL4 associated factor 17).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-071008-1 Predicted to act upstream of or within protein ubiquitination. Predicted to be located in nucleolus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Human ortholog(s) of this gene implicated in Woodhouse-Sakati syndrome. Orthologous to human DCAF17 (DDB1 and CUL4 associated factor 17).

Ensembl:

ensembl_id ENSDARG00000074909

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073828 False 4428 mRNA 0.39 14 3498377 3519253
TCONS_00073829 False 2526 mRNA 0.43 15 3499084 3519717
TCONS_00073830 True 1618 nonsense_mediated_decay 0.40 8 3508318 3519711

Neighbor

gene id symbol gene type direction distance location
XLOC_037591 cybrd1 coding downstream 1798 3490824 ~ 3496579 (-)
XLOC_037590 dlx2a coding downstream 97648 3397407 ~ 3400729 (-)
XLOC_037589 NA coding downstream 102856 3358397 ~ 3395521 (-)
XLOC_037588 NA coding downstream 217926 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 coding downstream 344091 3153726 ~ 3154286 (-)
XLOC_037593 gad1a coding upstream 102251 3621968 ~ 3653271 (-)
XLOC_037594 sp5a coding upstream 146684 3666401 ~ 3671911 (-)
XLOC_037595 myo3b coding upstream 179680 3699397 ~ 3866707 (-)
XLOC_037596 ubr3 coding upstream 378415 3898132 ~ 4018452 (-)
XLOC_037597 mylka coding upstream 504533 4024250 ~ 4075620 (-)
XLOC_037585 NA non-coding downstream 366209 3130688 ~ 3132168 (-)
XLOC_037581 NA non-coding downstream 631923 2861221 ~ 2866454 (-)
XLOC_037598 FP102171.1 non-coding upstream 924201 4443918 ~ 4447104 (-)
XLOC_037602 NA non-coding upstream 1346383 4866100 ~ 4867439 (-)
XLOC_037613 FQ377643.1 non-coding upstream 2889440 6409157 ~ 6409271 (-)
XLOC_037614 NA non-coding upstream 3011832 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 3197960 6717677 ~ 6717801 (-)

Expression


Co-expression Network