XLOC_037608 (CCKBR)


Basic Information

Item Value
gene id XLOC_037608
gene name CCKBR
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 5776359 ~ 5805229 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073859
GAGATGGATTCTCTGCGCATCCTGCTCTACTGTCTGATATTCCTGCTGAGTGTCTTTGGGAATCTGCTCATCATAGTACGAATGCGGACGGTGACCAACTCATTCCTGCTCTCTCTGGCCATCAGTGACCTGATGATGGCTGTGGTCTGCATGCCCTTCACTCTCATTCCCAACCTGATGGGGGACTTCATCTTTGGGGCTGCCATGTGCAAGATTGTGGCCTATCTTATGGGAATCTCTGTCTGCATATCTACCTTTAGTTTGGTGGCTATAGCCATTGAGAGGTACAGTGCTATTTGCAACCCGCTCAAGTCCCGAGCCTGGCAGACCCGATCTCATGCCTACAAAGTCATCGCTTCAACGTGGGTTGTGTCCTTCCTCATTATGACGCCGTATCCTATCTTCAGCACCTTGGTGGAGTtcaccaaaaacaacaacatcactGGTCACATGTGCCGTCATGACTGGAAGAATATGCTCATCTGTACTAGATCTGTAATTGGGTGCATCCTCTTGCTGTTTGTTCTGTTCTTTATCCCTGGAGTCGTAATGATCATCGCTTACGGGCTCATCTCTCGAGAGCTTTACCGTGGAATACAGTTTGAACTGGAGCAGAAGAAGGGACAGTGTGGAATGAAAAATGGTATAAGCGCCACTGTCTTAATTAGCAGCGACGACGGAGATGGCTGCTACATCCAGGTGTCCAAGAGACCCAACTCCATGGAGATGTCAGCCCTCACCCCAACAGGCTCCGCAAAGGTGGACCGACCCCGCAGCAACACATCCGAGGCTAAACTAATGGCCAAGAAGCGAGTGATCCGTATGCTGATCGTCATCGTGGCCATGTTCTTCATCTGCTGGATGCCTGTCTACTCCGTCAACACCTGGAAAGCATTCGACCTAGCTTCGGCCCACAGGGCTCTTTCTGGAGCCCCCATTTCATTCATCCACCTGCTCTCCTACACCTCAGCCTGCGTCAACCCCATCATCTACTGCTTCATGAATAAGCGCTTTCGAAAGGCTCTTCTTGCCACCTTCTCCTGCTGCTGTTGGCCCTGCCGTAAAAGAGGCTTCAGGGAAGGCGATGATGAGGTCACTGCTACCGGAGCGTCCATGTCTAAGTTCAACTACACCACTGTGAGCACAATGGGACCCTGCTGA
>TCONS_00073860
ACAATTTTGGAGATGGATTCTCTGCGCATCCTGCTCTACTGTCTGATATTCCTGCTGAGTGTCTTTGGGAATCTGCTCATCATAGTAGTGCTGATGGTGAATAAGCGAATGCGGACGGTGACCAACTCATTCCTGCTCTCTCTGGCCATCAGTGACCTGATGATGGCTGTGGTCTGCATGCCCTTCACTCTCATTCCCAACCTGATGGGGGACTTCATCTTTGGGGCTGCCATGTGCAAGATTGTGGCCTATCTTATGGGAATCTCTGTCTGCATATCTACCTTTAGTTTGGTGGCTATAGCCATTGAGAGGTACAGTGCTATTTGCAACCCGCTCAAGTCCCGAGCCTGGCAGACCCGATCTCATGCCTACAAAGTCATCGCTTCAACGTGGGTTGTGTCCTTCCTCATTATGACGCCGTATCCTATCTTCAGCACCTTGGTGGAGTtcaccaaaaacaacaacatcactGGTCACATGTGCCGTCATGACTGGAAGAATAGCGAGGTGGAGAAGGCATGGTGCATCCTCTTGCTGTTTGTTCTGTTCTTTATCCCTGGAGTCGTAATGATCATCGCTTACGGGCTCATCTCTCGAGAGCTTTACCGTGGAATACAGTTTGAACTGGAGCAGAAGAAGGGACAGTGTGGAATGAAAAATGGTATAAGCGCCACTGTCTTAATTAGCAGCGACGACGGAGATGGCTGCTACATCCAGGTGTCCAAGAGACCCAACTCCATGGAGATGTCAGCCCTCACCCCAACAGGCTCCGCAAAGGTGGACCGACCCCGCAGCAACACATCCGAGGCTAAACTAATGGCCAAGAAGCGAGTGATCCGTATGCTGATCGTCATCGTGGCCATGTTCTTCATCTGCTGGATGCCTGTCTACTCCGTCAACACCTGGAAAGCATTCGACCTAGCTTCGGCCCACAGGGCTCTTTCTGGAGCCCCCATTTCATTCATCCACCTGCTCTCCTACACCTCAGCCTGCGTCAACCCCATCATCTACTGCTTCATGAATAAGCGCTTTCGAAAGGCTCTTCTTGCCACCTTCTCCTGCTGCTGTTGGCCCTGCCGTAAAAGAGGCTTCAGGGAAGGCGATGATGAGGTCACTGCTACCGGAGCGTCCATGTCTAAGTTCAACTACACCACTGTGAGCACAATGGGACCCTGCTGA
>TCONS_00073861
ATGATACATTTAAAGATGGATTCTCTGCGCATCCTGCTCTACTGTCTGATATTCCTGCTGAGTGTCTTTGGGAATCTGCTCATCATAGTAGTGCTGATGGTGAATAAGCGAATGCGGACGGTGACCAACTCATTCCTGCTCTCTCTGGCCATCAGTGACCTGATGATGGCTGTGGTCTGCATGCCCTTCACTCTCATTCCCAACCTGATGGGGGACTTCATCTTTGGGGCTGCCATGTGCAAGATTGTGGCCTATCTTATGGGAATCTCTGTCTGCATATCTACCTTTAGTTTGGTGGCTATAGCCATTGAGAGGTACAGTGCTATTTGCAACCCGCTCAAGTCCCGAGCCTGGCAGACCCGATCTCATGCCTACAAAGTCATCGCTTCAACGTGGGTTGTGTCCTTCCTCATTATGACGCCGTATCCTATCTTCAGCACCTTGGTGGAGTtcaccaaaaacaacaacatcactGGTCACATGTGCCGTCATGACTGGAAGAATAGCGAGGTGGAGAAGGCATGGTGCATCCTCTTGCTGTTTGTTCTGTTCTTTATCCCTGGAGTCGTAATGATCATCGCTTACGGGCTCATCTCTCGAGAGCTTTACCGTGGAATACAGTTTGAACTGGAGCAGAAGAAGGGACAGTGTGGAATGAAAAATGGTATAAGCGCCACTGTCTTAATTAGCAGCGACGACGGAGATGGCTGCTACATCCAGGTGTCCAAGAGACCCAACTCCATGGAGATGTCAGCCCTCACCCCAACAGGCTCCGCAAAGGTGGACCGACCCCGCAGCAACACATCCGAGGCTAAACTAATGGCCAAGAAGCGAGTGATCCGTATGCTGATCGTCATCGTGGCCATGTTCTTCATCTGCTGGATGCCTGTCTACTCCGTCAACACCTGGAAAGCATTCGACCTAGCTTCGGCCCACAGGGCTCTTTCTGGAGCCCCCATTTCATTCATCCACCTGCTCTCCTACACCTCAGCCTGCGTCAACCCCATCATCTACTGCTTCATGAATAAGCGCTTTCGAAAGGCTCTTCTTGCCACCTTCTCCTGCTGCTGTTGGCCCTGCCGTAAAAGAGGCTTCAGGGAAGGCGATGATGAGGTCACTGCTACCGGAGCGTCCATGTCTAAGTTCAACTACACCACTGTGAGCACAATGGGACCCTGCTGA

Function

symbol description
cckbr Enables G protein-coupled peptide receptor activity; peptide hormone binding activity; and type B gastrin/cholecystokinin receptor binding activity. Involved in G protein-coupled receptor signaling pathway; positive regulation of cell population proliferation; and positive regulation of cytosolic calcium ion concentration. Predicted to be located in membrane. Predicted to be active in plasma membrane. Implicated in pancreatic cancer and panic disorder. Biomarker of pancreatic ductal carcinoma.

GO: NA

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04971 Gastric acid secretion
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDARG00000076824

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073859 False 1161 mRNA 0.51 6 5776359 5803016
TCONS_00073860 False 1179 mRNA 0.51 5 5776359 5805045
TCONS_00073861 True 1182 mRNA 0.51 5 5776359 5805229

Neighbor

gene id symbol gene type direction distance location
XLOC_037607 abhd13 coding downstream 425342 5345236 ~ 5351017 (-)
XLOC_037606 tnfsf13b coding downstream 438436 5325015 ~ 5337923 (-)
XLOC_037605 ACVR1C coding downstream 457486 5271524 ~ 5318873 (-)
XLOC_037604 cytip coding downstream 512412 5253137 ~ 5263947 (-)
XLOC_037603 nr4a2a coding downstream 730044 5040985 ~ 5046315 (-)
XLOC_037609 GPR89B coding upstream 88379 5893608 ~ 5916755 (-)
XLOC_037610 tmtops2b coding upstream 313133 6118362 ~ 6208067 (-)
XLOC_037611 ecrg4a coding upstream 566690 6371919 ~ 6380653 (-)
XLOC_037612 nck2a coding upstream 588139 6393368 ~ 6502491 (-)
XLOC_037613 FQ377643.1 coding upstream 603928 6409157 ~ 6409271 (-)
XLOC_037602 NA non-coding downstream 908920 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 1329255 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 2380838 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 2495908 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 2622073 3153726 ~ 3154286 (-)
XLOC_037614 NA non-coding upstream 726320 6531549 ~ 6548796 (-)
XLOC_037618 BX842683.1 non-coding upstream 912448 6717677 ~ 6717801 (-)
XLOC_037626 BX942813.1 non-coding upstream 1552590 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 1694031 7499260 ~ 7505531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_02755842_02769590 NA coding CI01000037 null 2755842 ~ 2771166 (+)
bowfin (Amia calva) AMCG00014350 NA coding CM030128.1 CM030128.1 10352845 ~ 10380421 (+)