XLOC_037610 (tmtops2b)


Basic Information

Item Value
gene id XLOC_037610
gene name tmtops2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6118362 ~ 6208067 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073864
AATACTGAAGGACGCGTTCGTGCTTTGCACAGGTGGGACTGAGacatcatttttacattttggcGGTAGAATGCATCAATGTGTCGAGAGATGAAGAAGCACTTTGAACGGAGATCAATTTATCAACAATTGTTTTGGCTATACTGCTGTGACGCGCGCTCAGTACTCGAGCTGAAAATGACCCAAAAAGTCTAATGGAATGGATACCGCGAGGCTAAATGAAAGGAGCTCCCTTATTGATATCGACACAGTATTCAAGTTAGATAGCTAGTTTGAGCATCTGTCATATCCAACAGTTTGGAGTGGTTTTAAAGTGAAGTGCGCTGTCATTGAGAATCACCATCATCTGTGAATCATGATGCTGATGCGCCGGAGAGCGCTGAGGTGTTTACTGGAGGAGAGCAACAGTTAAATTCGTGCTTCTTACTTCGAGAAATCCAGCAGACTCGAACGAACTTTTTTAGCTATGTTTTTCGAGCAGGCCGATTTAAACTACAGCTTCAACATGAGCGAGGAAGACCGCTTAACTCTTCTGGACGAGGACTGGAGCGACTCGCCAATGGAGACGCTCTCACGCGCGGGCTTCATCGCGCTCTCTGTGTTCCTGGGATTCATCATGACTTTCGGCTTTTTTAATAACCTCGTAGTATTAGTGCTTTTCTGTAAGTTTAAGACGCTGAGGACGCCGGTTAACATGCTGCTTCTTAACATCAGCATCAGTGACATGTTGGTGTGTATGTTCGGGACGACCCTGAGCTTCGCGTCCAGTGTGCGGGGAAGGTGGCTGCTCGGGCGACACGGCTGCATGTGGTACGGCTTCATCAACTCCTGCTTCGGTATTGTTTCTCTCATATCCTTGGTGGTTCTTTCTTACGACCGCTACAGCACATTGACTGTGTACCATAAACGGGCTCCAGACTACCGCAAGCCTCTGCTGGCAGTAGGAGGCTCCTGGCTGTACTCTCTGATCTGGACAGTGCCTCCTCTTTTAGGCTGGAGCAGTTATGGGCTGGAGGGTGCCGGAACCAGCTGCTCTGTATCATGGACTCAGCGCACGGCCGAGTCTCATGCCTACATCATCTGTCTGTTTGTATTCTGCCTGGGACTACCAGTGCTTGTCATGGTCTACTGCTATGGGAGACTGCTGTACGCCGTCAAACAGgTAGGGAAGATACGCAAGACGGCTGCACGGAAACGGGAGTACCATGTGTTGTTCATGGTTATCACCACTGTGGTGTGTTACCTTTTGTGCTGGATGCCGTACGGCGTCGTGGCCATGATGGCCACATTTGGCCGGCCGGGAATCATCTCACCTGTGGCCAGTGTGGTTCCCTCTCTCCTCGCCAAGAGCAGCACGGTCATCAACCCACTCATATACATCCTCATGAACAAACAGTTCTACAGGTGTTTCCGCATCTTGTTCTGCTGTCAGAGAAGTTTGCTACAGAACGGTCACTCCTCCATGCCCTCCAAGACCACCGTCATCCAGCTGAACCGCAGGGTCAACAGTAACGCTGTAGCCTGCACCGCTCAGATCTCCACCGGGACTCACAACCATGATTGCAGCACTCACGTCACAGAGAGGAGCAACCCTCCAGAGGTCATTCCATGAACATTGACATTTAAGAAAACTGACCAGGGCTGAATGCAGGCCTTCAGTCTCTGCTTCGTCTTGATCTTGTTCAGCTTTTACCCTCATTCACTCTCTAGGGTTTAGATTTTCCGTGCCTCTTTTACAGCCTTGCATCGATGCATTGCAAATgtttaagaataaaaacaaactcTGTAGAAAATACCAGACAATCtatttcattgtttgtttttgtgtggtgCATGAAGAAATGATGTCAATCtccagtacaaaaaaaaataaaaaatccagtgGTGAGTGTTTATATATTGTCCTGGAAGGTggaaaaaaactgcttat

Function

symbol description
tmtops2b Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0007165 signal transduction biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-43 Enables photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gut; heart; and testis.

Ensembl:

ensembl_id ENSDARG00000027822

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073864 True 1930 mRNA 0.48 4 6118362 6208067

Neighbor

gene id symbol gene type direction distance location
XLOC_037609 GPR89B coding downstream 201607 5893608 ~ 5916755 (-)
XLOC_037608 CCKBR coding downstream 313133 5776359 ~ 5805229 (-)
XLOC_037607 abhd13 coding downstream 767345 5345236 ~ 5351017 (-)
XLOC_037606 tnfsf13b coding downstream 780439 5325015 ~ 5337923 (-)
XLOC_037605 ACVR1C coding downstream 799489 5271524 ~ 5318873 (-)
XLOC_037611 ecrg4a coding upstream 163852 6371919 ~ 6380653 (-)
XLOC_037612 nck2a coding upstream 185301 6393368 ~ 6502491 (-)
XLOC_037613 FQ377643.1 coding upstream 201090 6409157 ~ 6409271 (-)
XLOC_037614 NA coding upstream 323482 6531549 ~ 6548796 (-)
XLOC_037615 C9H2orf49 coding upstream 399447 6607514 ~ 6618067 (-)
XLOC_037602 NA non-coding downstream 1250923 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 1671258 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 2722841 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 2837911 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 2964076 3153726 ~ 3154286 (-)
XLOC_037618 BX842683.1 non-coding upstream 509610 6717677 ~ 6717801 (-)
XLOC_037626 BX942813.1 non-coding upstream 1149752 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 1291193 7499260 ~ 7505531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000037_02527352_02576225 TMTOPS2B coding CI01000037 null 2526102 ~ 2576704 (+)
bowfin (Amia calva) AMCG00014352 NA coding CM030128.1 CM030128.1 10229000 ~ 10242261 (+)