XLOC_037611 (ecrg4a)


Basic Information

Item Value
gene id XLOC_037611
gene name ecrg4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 6371919 ~ 6380653 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073865
AGACTGGAGACGGATCTGGCGTACTGGATGGATCAGCACCGCTCCAGTGATCAGGGTCGCCAGCATCACTATGATGAAAACGCTGCCCTGGGGCCTCGGGGAGCTGCTTCATACAGACACGGGGCAAATGTCAACTATGACTACTACTAGAACAGTCCATTCAACCAGAAACACGTCACCGATGCCAACAAGATGATTCTCTGCTCTGATTTACTGCACAGTGATCTCAgctctcttctttctttctttctttctttcttcctctaTAGTTTGTGCTTCCTTTTGTAAATGGAAATAAGAGGAGAACATGTATTTTTAGTGGAACAGTAAAGGATTCACATCttcatcatttacttaataaaaaaaaaattgcaattccTGGAAAGAAAAGTGTAATAACCGTGACTCATTCATACCTTTGTGTGATGAAAAGCATGACATTATCAGTCATTACAGGAAATCTTGTTCTCCGCTATAGATTTAAGAGCTCTCAGCTTTGGTATTCATAGACTTTCTTTATGTTGAAAGAATGGCAGGATAAAATAATTTTACTACCTTGTTCTGTAACTTTAAGTTTATATACGCTTAATTTTCTTGTAATAAAGGTGTTAAAAAAA
>TCONS_00073866
CGACAGAGAAGAAGGAGAAGAGCAGAAACCATGCTTTCTGAAAAGTTTCACCTGCGTCTGCTCACACTTTTGACCTTACTGACAGCACTGTCTCTCACAGATGTCGCAAGTGAGAGCAAGCTGGAAAAACTTTTGATGAAACGAGTGGACAGGGATGTAAAGCCGGCTGCAGCGGTGGCCGTTTCTCCCTCCAAAGCCAAAGAGTTCCTGACCTCCCTGAAAAGGCCTAAAAGAAACCTGTGGGACCGCAGCCGGCCGGACGTCCAGCAGTGGATCCAGCAGTTCATGTACATGGGCTTTGATGAAGCTAGACTGGAGACGGATCTGGCGTACTGGATGGATCAGCACCGCTCCAGTGATCAGGGTCGCCAGCATCACTATGATGAAAACGCTGCCCTGGGGCCTCGGGGAGCTGCTTCATACAGACACGGGGCAAATGTCAACTATGACTACTACTAGAACAGTCCATTCAACCAGAAACACGTCACCGATGCCAACAAGATGATTCTCTGCTCTGATTTACTGCACAGTGATCTCAgctctcttctttctttctttctttctttcttcctctaTAGTTTGTGCTTCCTTTTGTAAATGGAAATAAGAGGAGAACATGTATTTTTAGTGGAACAGTAAAGGATTCACATCttcatcatttacttaataaaaaaaaaattgcaattccTGGAAAGAAAAGTGTAATAACCGTGACTCATTCATACCTTTGTGTGATGAAAAGCATGACATTATCAGTCATTACAGGAAATCTTGTTCTCCGCTATAGATTTAAGAGCTCTCAGCTTTGGTATTCATAGACTTTCTTTATGTTGAAAGAATGGCAGGATAAAATAATTTTACTACCTTGTTCTGTAACTTTAAGTTTATATACGCTTAATTTTCTTGTAATAAAGGTGTT

Function

symbol description
ecrg4a Acts upstream of or within central nervous system development and regulation of cell population proliferation. Predicted to be located in apical plasma membrane and cytoplasm. Predicted to be active in extracellular space. Is expressed in epidermis; pectoral fin; and pharyngeal arch. Orthologous to human ECRG4 (ECRG4 augurin precursor).

GO:

id name namespace
GO:0042127 regulation of cell population proliferation biological_process
GO:0009611 response to wounding biological_process
GO:0070314 G1 to G0 transition biological_process
GO:0090398 cellular senescence biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0031145 anaphase-promoting complex-dependent catabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-189 Acts upstream of or within central nervous system development and regulation of cell population proliferation. Predicted to be located in apical plasma membrane and cytoplasm. Predicted to be active in extracellular space. Is expressed in epidermis; pectoral fin; and pharyngeal arch. Orthologous to human ECRG4 (ECRG4 augurin precursor).

Ensembl:

ensembl_id ENSDARG00000056087

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073865 False 617 mRNA 0.38 1 6371919 6372535
TCONS_00073866 True 919 mRNA 0.43 4 6371926 6380653

Neighbor

gene id symbol gene type direction distance location
XLOC_037610 tmtops2b coding downstream 163852 6118362 ~ 6208067 (-)
XLOC_037609 GPR89B coding downstream 455164 5893608 ~ 5916755 (-)
XLOC_037608 CCKBR coding downstream 566690 5776359 ~ 5805229 (-)
XLOC_037607 abhd13 coding downstream 1020902 5345236 ~ 5351017 (-)
XLOC_037606 tnfsf13b coding downstream 1033996 5325015 ~ 5337923 (-)
XLOC_037612 nck2a coding upstream 12715 6393368 ~ 6502491 (-)
XLOC_037613 FQ377643.1 coding upstream 28504 6409157 ~ 6409271 (-)
XLOC_037614 NA coding upstream 150896 6531549 ~ 6548796 (-)
XLOC_037615 C9H2orf49 coding upstream 226861 6607514 ~ 6618067 (-)
XLOC_037616 GPR45 coding upstream 242883 6623536 ~ 6624663 (-)
XLOC_037602 NA non-coding downstream 1504480 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 1924815 4443918 ~ 4447104 (-)
XLOC_037589 NA non-coding downstream 2976398 3358397 ~ 3395521 (-)
XLOC_037588 NA non-coding downstream 3091468 3265568 ~ 3280451 (-)
XLOC_037587 FP236594.1 non-coding downstream 3217633 3153726 ~ 3154286 (-)
XLOC_037618 BX842683.1 non-coding upstream 337024 6717677 ~ 6717801 (-)
XLOC_037626 BX942813.1 non-coding upstream 977166 7357819 ~ 7359484 (-)
XLOC_037631 NA non-coding upstream 1118607 7499260 ~ 7505531 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014344 NA coding CM030128.1 CM030128.1 10156465 ~ 10162165 (+)