XLOC_037625 (mitd1)


Basic Information

Item Value
gene id XLOC_037625
gene name mitd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7275185 ~ 7287375 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073884
GGAAACGTCTAAACATACTGTAGCGTCTGATTCAAAGCAAATGTTTTCTCTCGTAAAGTTGTTTTCTCGGTGTAATACAGTCGACGATACattcttttaattcattttaacaaaataaatgcgTTTCTATTGATTAGTGTAACTTCAAACTACAAACGCCTCTAAATCTGATTGTTTTGATTTGTTGAATGGCGCTGCTAATGGTATGCCTTTAACGATTACTGTCAGCAGAGCAGTCATCATCATCTGTGTTGTTGACGGGGGCTCATGGCTCAGGATCTGCTGCCGGGTGTGGAGAGCTCCGCGGTGTCCGTCCTGAAGAGAGCCGTGCAGCTCGACAACTGCTCCCGCTTTCAGGAGGCGCTGGTCTGCTACCAGGAGGGCATTCAGCTGCTGCTGGACGTGCTCAAAGCTGTAAAAGATGAAGCGAAGAAGATGCACTACAGAGAGAAGATCAAGGGTTACATGGAAAGAGCAGAACAGATCAAGGAGCACACCACCAAGCTAAAAGAAGAGGGTAAATACCACGAGCAGATAAAGATAGCAGACAGCTCCACTGGTTACAGCTATGAATCCCTCTTCAAGCCGTACATCACAGATGGACTGACTGAAGTCTGGGTGGAAGACCCATATGTACGGCACGTCCATCAGTTGTATAATTTCCTCCGTTTCTGTGAGATGCTGCTGAAATGTCCATCTACAGTGAAGACCATTCACCTTCTGACCTCACAGGATGAGGACAGCTCCACTCAACAAAGCAGTGCTCTGGCAGAAATGAAGCAGTCGCTATTGAGTAAAGATATCTGTCTGGACATTCAGTACTCCTCTACGATTCATGACCGAGAGATCAGGTTTAACAACGGTTGGATTATTAAGATCGGCAGGGGACTCGATTATTTCAAAAAACCAAAGGGTCGCTTCTCTGTTGGATACTGTGACTATGATTTGAGAGAGTGTCATGAGACTACAGTTGACATTTTTCATACCAAACACACCAAGAAGACCTAATCTTGCTTGCGAAAGCTTTTCCACTGCCTGACATATTTACGGGACTTCATTTGCAATCCGCAGGCCTACGTGGATGACTGGAAATGTGCCTTTTGATCCCATTTTAAGCTTTTAAAAGATGCGAaagaactgatttatttacttttacatgCTTCTATCTGAATTGCAGGGGAATATGCAGAGGCTTATTCTGTAACTTGTATGAGttttttattaaagggatagttcacacaaaattgaaCATTTCTGCACTGTTTTTtgtccctcaagtggttccaaacctttatgtttcctcgttttgttaaacacaaaagaagatatatttaagaaagctgaaaaccaatcattgacttccataagatgaaaaacaaccctgctgaaaaatccagcttaaaccagcctaggctggttggctggttttagctggttgatgaggctggttttagaggggtttgtgCCATttacaggctggtttccagctatttccagcctggtcttagctggtcaggctgaaaaatgacctgctaaaaccagcttgaccaccctagccaggctgagagcccagccaaaaccagctatgtccagcttaaaccaggctggtcaagctggttttagctggattaagctggtcatttttcagcctgaccagctaagaccaggctgtaaatggctgaaaaccagcctggaaatggccaacacccctctaaaaccaggctggtcaaccaactaaaaccagccaaccagcctaggctggtttaagctggatttttaagtagggaaatactttgaaagtcaACGGTTGCAGGTTTTTAActtcaaaatatattcctttgtgtttaacagaagaaaggaactcttaaaggtttgaatcaaataaaagagttattaaataatgacagaaatgtCACTTTTGGGCTGAACAATTTCCCTCAAACTTCTGTTCACTGAAATGTATGTTTACTTGTTCTGCTTCTGTAACTAttgtaaaaagtacatttgtaaataaaatgtgtCTAATATTTCTGTCACCATTATATAATGTGCCCTTGATTCAAACCGTAAAGGTGAGCTGTTTTACTTGCGATGCTGATTTCAATAAACGTTTTGCACTGTA
>TCONS_00073886
TGTGTTGTTGACGGGGGCTCATGGCTCAGGATCTGCTGCCGGGTGTGGAGAGCTCCGCGGTGTCCGTCCTGAAGAGAGCCGTGCAGCTCGACAACTGCTCCCGCTTTCAGGAGGCGCTGGTCTGCTACCAGGAGGGCATTCAGCTGCTGCTGGACGTGCTCAAAGCTGTAAAAGATGAAGCGAAGAAGATGCACTACAGAGAGAAGATCAAGGGTTACATGGAAAGAGCAGAACAGATCAAGGAGCACACCACCAAGCTAAAAGAAGAGGGTAAATACCACGAGCAGATAAAGATAGCAGACAGCTCCACTGGTTACAGCTATGAATCCCTCTTCAAGCCGTACATCACAGATGGACTGACTGAAGTCTGGGTGGAAGACCCATATGTACGGCACGTCCATCAGTTGTATAATTTCCTCCGTTTCTGTGAGATGCTGCTGAAATGTCCATCTACAGTGAAGACCATTCACCTTCTGACCTCACAGGATGAGGACAGCTCCACTCAACAAAGCAGTGCTCTGGCAGAAATGAAGCAGTCGCTATTGAGTAAAGATATCTGTCTGGACATTCAGTACTCCTCTACGATTCATGACCGAGAGATCAGGTTTAACAACGGTTGGATTATTAAGATCGGCAGGGGACTCGATTATTTCAAAAAACCAAAGGGTCGCTTCTCTGTTGGATACTGTGACTATGATTTGAGAGAGTGTCATGAGACTACAGTTGACATTTTTCATACCAAACACACCAAGAAGACCTAATCTTGCTTGCGAAAGCTTTTCCACTGCCTGACATATTTACGGGACTTCATTTGCAATCCGCAGGCCTACGTGGATGACTGGAAATGTGCCTTTTGATCCCATTTTAAGCTTTTAAAAGATGCGAaagaactgatttatttacttttacatgCTTCTATCTGAATTGCAGGGGAATATGCAGAGGCTTATTCTGTAACTTGTATGAGttttttattaaagggatagttcacacaaaattgaaCATTTCTGCACTGTTTTTtgtccctcaagtggttccaaacctttatgtttcctcgttttgttaaacacaaaagaagatatatttaagaaagctgaaaaccaatcattgacttccataagatgaaaaggaaatactttgaaagtcaACGGTTGCAGGTTTTTAActtcaaaatatattcctttgtgtttaacagaagaaaggaactcttaaaggtttgaatcaaataaaagagttattaaataatgacagaaatgtCACTTTTGGGCTGAACAATTTCCCTCAAACTTCTGTTCACTGAAATGTATGTTTACTTGTTCTGCTTCTGTAACTAttgtaaaaagtacatttgtaaataaaatgtgtCTAATATTTCTGTCACCATTATATAATGTGCCCTTGATTCAAACCGTAAAGGTGAGCTGTTTTACTTGCGATGCTGATTTCAATAAACGTTTTGCACTGT
>TCONS_00073885
TGTGTTGTTGACGGGGGCTCATGGCTCAGGATCTGCTGCCGGGTGTGGAGAGCTCCGCGGTGTCCGTCCTGAAGAGAGCCGTGCAGCTCGACAACTGCTCCCGCTTTCAGGAGGCGCTGGTCTGCTACCAGGAGGGCATTCAGCTGCTGCTGGACGTGCTCAAAGCTGTAAAAGATGAAGCGAAGAAGATGCACTACAGAGAGAAGATCAAGGGTTACATGGAAAGAGCAGAACAGATCAAGGAGCACACCACCAAGCTAAAAGAAGAGGGTAAATACCACGAGCAGATAAAGATAGCAGACAGCTCCACTGGTTACAGCTATGAATCCCTCTTCAAGCCGTACATCACAGATGGACTGACTGAAGTCTGGGTGGAAGACCCATATGTACGGCACGTCCATCAGTTGTATAATTTCCTCCGTTTCTGTGAGATGCTGCTGAAATGTCCATCTACAGTGAAGACCATTCACCTTCTGACCTCACAGGATGAGGACAGCTCCACTCAACAAAGCAGTGCTCTGGCAGAAATGAAGCAGTCGCTATTGAGTAAAGATATCTGTCTGGACATTCAGTACTCCTCTACGATTCATGACCGAGAGATCAGGTTTAACAACGGTTGGATTATTAAGATCGGCAGGGGACTCGATTATTTCAAAAAACCAAAGGGTCGCTTCTCTGTTGGATACTGTGACTATGATTTGAGAGAGTGTCATGAGACTACAGTTGACATTTTTCATACCAAACACACCAAGAAGACCTAATCTTGCTTGCGAAAGCTTTTCCACTGCCTGACATATTTACGGGACTTCATTTGCAATCCGCAGGCCTACGTGGATGACTGGAAATGTGCCTTTTGATCCCATTTTAAGCTTTTAAAAGATGCGAaagaactgatttatttacttttacatgCTTCTATCTGAATTGCAGGGGAATATGCAGAGGCTTATTCTGTAACTTGTATGAGttttttattaaagggatagttcacacaaaattgaaCATTTCTGCACTGTTTTTtgtccctcaagtggttccaaacctttatgtttcctcgttttgttaaacacaaaagaagatatatttaagaaagctgaaaaccaatcattgacttccataagatgaaaaacaaccctgctgaaaaatccagCGGTTGCAGGTTTTTAActtcaaaatatattcctttgtgtttaacagaagaaaggaactcttaaaggtttgaatcaaataaaagagttattaaataatgacagaaatgtCACTTTTGGGCTGAACAATTTCCCTCAAACTTCTGTTCACTGAAATGTATGTTTACTTGTTCTGCTTCTGTAACTAttgtaaaaagtacatttgtaaataaaatgtgtCTAATATTTCTGTCACCATTATATAATGTGCCCTTGATTCAAACCGTAAAGGTGAGCTGTTTTACTTGCGATGCTGATTTCAATAAACGTTTTGCACTGT

Function

symbol description
mitd1 Predicted to be involved in midbody abscission. Predicted to colocalize with midbody. Orthologous to human MITD1 (microtubule interacting and trafficking domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-923 Predicted to be involved in midbody abscission. Predicted to colocalize with midbody. Orthologous to human MITD1 (microtubule interacting and trafficking domain containing 1).

Ensembl:

ensembl_id ENSDARG00000044766

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073884 False 2122 mRNA 0.42 7 7275185 7287375
TCONS_00073886 False 1465 mRNA 0.41 8 7275186 7287128
TCONS_00073885 True 1467 mRNA 0.41 8 7275186 7287128

Neighbor

gene id symbol gene type direction distance location
XLOC_037624 si:ch211-121j5.4 coding downstream 17308 7240896 ~ 7257877 (-)
XLOC_037623 creg2 coding downstream 36346 7228083 ~ 7238839 (-)
XLOC_037622 mgat4a coding downstream 61413 7091028 ~ 7213772 (-)
XLOC_037621 coa5 coding downstream 185882 7081577 ~ 7089303 (-)
XLOC_037620 slc9a2 coding downstream 283535 6963039 ~ 6991650 (-)
XLOC_037626 BX942813.1 coding upstream 70444 7357819 ~ 7359484 (-)
XLOC_037627 slc23a3 coding upstream 84587 7371962 ~ 7378566 (-)
XLOC_037628 slc23a3 coding upstream 102832 7390207 ~ 7390388 (-)
XLOC_037629 slc23a3 coding upstream 106854 7394229 ~ 7394412 (-)
XLOC_037630 bin1a coding upstream 123423 7410798 ~ 7444753 (-)
XLOC_037618 BX842683.1 non-coding downstream 557384 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 726389 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 865914 6409157 ~ 6409271 (-)
XLOC_037602 NA non-coding downstream 2407746 4866100 ~ 4867439 (-)
XLOC_037598 FP102171.1 non-coding downstream 2828081 4443918 ~ 4447104 (-)
XLOC_037631 NA non-coding upstream 211885 7499260 ~ 7505531 (-)
XLOC_037636 NA non-coding upstream 654394 7941769 ~ 7942597 (-)
XLOC_037637 NA non-coding upstream 872966 8160341 ~ 8163995 (-)
XLOC_037638 NA non-coding upstream 996780 8284155 ~ 8286208 (-)

Expression


Co-expression Network