XLOC_037631


Basic Information

Item Value
gene id XLOC_037631
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 7499260 ~ 7505531 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075291
caaaaagttatgaattgccttgagattgcgttggacattaatattaggttagattgaggtctccagcatctaaggacaatgttgttttgatgtccaataaaaatgtgaaatgacgttgattttaggttgtattggaaagtgactgaaatccaacgtcgagccaacatcttaacccgtcattttgacgtcaaatactgacatttatttgccaggtttggcaaccaaaatccaacatctgatagacgtcatagtggtaacatccacacaacttcaagctgtaaccATTAGACGATCATATTTCGATGTTTTTGGGTTGCGTTGGACAGttaccaaaatgcaacgtctgttCGACATTGGACATTGACCTGATGTTGGGTACTGGCGTAAAAATCAAGgaactttgatGCCTTACCATGGCTGGAGCAGGCGTAGTGATACTATGCAGCCTAAAAATAGTCCCCTGCACCAAAATCTACACTTGGACAACCTGTTAGAATCTGCAAAATATCATTGCCCCTGCTGCAggcatggtacagcagcaaaaatccttgattattacgccggaATTAGTATAGTTCCTACCTATATCAGTCTAAAAAGAGCAACTTTAATTATCAGACTTAGCAAATACAAAAGAGTGAAGCTTTAAATAGAAGAAAAGATTgaattatttagttaattttcgagcaagatgctaatagtctaatctaattcagtgatctatgctaagctaagctaagctaatgtGCTCCTGTCAGAACCAGAGATGGCTAAATGGATTCAACAAAGGTAAAACTCAACTCCGTTTTCCAAATGGAGAGCTCCTTTAAGATTAACCTTGCAGCCACACTCGCAGGACGACAGACGCTTTCACACACCACACAAAACACTCCTTTTCTCTCTATTtctgcatgtacacacacacatactcggtCTGTATCTCCCTCCCGTCACTTTCCTTTTTATACGCATCTTTTTTTCTGTGAGATGCCCACCATTGTAAATCTCAGAAATCCTTCTTTAATCGCTTTCAAAAACTCTCTCAGAGGAGGCAAGGACACTTTAAAATCATCCACACGAAAGCCTTCAGTGTTCACAGTTACATCGCTAGGGCTCCTCTCAGTGCCTCGGCTCCTGAGATTTAGCTGGGAGTCACCTGAAAAGTCCCTGCTTACTTCTATATATAAGTCTTGAATGAAAATCAAAAGTTTGGAATAATTAAGAAGCTTTCatgggtttatttattttaaaactctgcattcatttgattaaaaatacagtaaaatctgtAATAcatgtgtattattatttttaaatgtaattaattttttattgtaaagatGAAATTTAGCATTAGCATTTAGCAGTGTCACACAATACTTCTGAAATCATCCTGACATAGTTTCTTATTATCTATGCTGCCTGCAATGTATAGCTTTTTCCCTACATTTACAAATTACTTACTTTAAATACCAGTTTgatgttcaccaaaaaaaaatgtGATCACATTCAGACCAGGCAgacaaaagatttaaaaaaataatacatttaataatagcTACAGAATTATACTTATGACTTGTGAATGGTTTGGAACttgaaataaattttatttaacagggacaacgGTTATTGATCCTGGTCTATTTGTAAACATCAAATCTATTTGCATATGTGGGGAACTAGTTACTCTTGTTGGACCTTTAACTAATTGgatacagttttttttctgatttattctCCCAGTTTATATTAAAATCCCCCATAATTAGCATATCTTgagggggcgaagcagtggcgcagtgagtagtgctgtcgcctcacagcaagaagatcgctgggttgctggttaaaacctcggctcagttggcatttctgtgaggagtttgcatgttctccctgcgttcgcgtgggtttcctccgggtgctccggttttcccccacagtccaaagacatgctgcaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtatgagggtgacaggccggccggaatgtgtaataaagtcgttatcatatggacaagtctaaatggaggacttgttccaaaccgcCGACCCCGTAACCATActggactaaggccaaagaagaagatgATTGGCATATCTTTTGTGATCACGTTGCTTTAGAATTTTatcaatttgttttataaaaactcATTTGAAGAATACAGATGCAAAAACCCCTAAAAGCCGAATAAAGTTTCCTTTAAAAAATGAGCagttttatcaggctcctgtttGTAGGTTCGGCTATTTTAAGTTTATGGCAAAGAATGCACTCTTTTAAAGGTCTTACAAATGAAAACTCAACATAAGCataggagtctgagaaaaatgctcatttttgatggaaatttcagCAGCACTTAGAGGCTTTTTGCATCTGACTTTTTGCATCTGAGCTCTTCATATCAGCAGATGGTGGcctatacaaaaaaattatattaattgacAACAATTTGGCCAAATCACAAGACTCGTTTTAGATTCCTACATTTCCCAAGTCATCCATTTTAAGAAGGGGGTTTCATTTAGAATTTTATCATAGAATGATTTACTTGAAGAGGCCACTTACGCAGCATTATGAAACGTTGGCACCAGGGCCTGAAAGTATTTCAAGTTTTGGGGTTTGTAAACAAAGATTATTATGACATTTCTAAATATGCTGATAGCTTTTGATTAGTTTTGTCATGCAACTACTAGActggaaaaaaaactattcaaagatgattccttggatttactacactttttttaaggtaagtggttgtaaacaatttatttgggctgaatttaaacaaacaaatgaagttgaacatacattcattgtcttttcggcttagtaactttattaatctggggttgctacagcgaaataaattgccaacttatccagcatgtgttttatgcaacggatgcccttccagctgcaacccatctctgggaaacatccatacacactcacactcatacactacggacaatttagccaacccaattcgcctgtaccgcatatctttgttATTAATCTGTGGGTCATGTGCGTTCCGAACTGTGGGTTGGGATCAGTTACGTACCCCTAATATTTATATAGCTATATGTAATCTTTTCCCAAAGTTTCGAATACTTTGGCATCAaagaaataattgtttaaaaatatattaaattgtaaaaaaaagaagatgCACAATGTTACTGTATTTCAAATCAAGTAAACTATATACAGCTTTAATCATAACTATTCCAAACTTTTAATCTGTAGTGTAACCGAACACATAAAAGCAGGCTGAAAAACATGTATATCTACAGCAAAAATGCAATGGTGGCACTTTCCCCACATACATTGGCTAACAGATGCACAAATCATCATACTGTATGCTTGTGCAATGGGCTCAGATTAAACAGAGACTGAGTTCACCGAACACGGTTTGACAGATTTTGTGTAGGCCCTGACACAGAGCAGATAAAGCCTTTTGAAACAGTTACAAAAAACCACACACACTTCCCTGCCTGTGCTGTAAACATAAATGTTATCGAAAACATCTTTAAAAGGTCAGAAACCAACAGGAGGATTGAAGTCTAAATCTGTAAACTGGATATACGAAGAGTCTGTCTAGCAGAAGCCGTGCATGCTTTATGACACTTTAGTCCCTTAAAAGCCAAGGCCATATTTGGTCCCGCGTTCAGATGGAACATAATGGATTTTCTTTAAATCGGCCGCTGCTATAATGAGACCGCTCTTCTCGGACGGATTGAAACGGCAGCCTAATTAAGGGAAAGTTGCAGGCAAACATACCACAACCATCTTCAGCCATATAAAGTGGAGTTGAATGCGAGAGTCCTACTGTGGTTACATAACCACATGCTCTAGATTTCATCCGGCAGCAAAAGTTCTCGGAATGGTTCGTGCAGTGCAGTTCCTGTTGAGGAGAAGATATGAGGTCAACCTCTCACCACAGGGCCTGTGTGGGCTGTTAGGGGCACTTGGGAGCCGTAGTCATAGTCCAAATCGACAACGTGTGAGCCGCCAATCAAGCGCCCATGAGAGTATCCCCTTCTGTCGGCACGTCTGTCACGGAAGTTCTGGATGTAACTCTAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0043624 cellular protein complex disassembly biological_process
GO:0070831 basement membrane assembly biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0048856 anatomical structure development biological_process
GO:1901879 regulation of protein depolymerization biological_process
GO:1901880 negative regulation of protein depolymerization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0051261 protein depolymerization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0030834 regulation of actin filament depolymerization biological_process
GO:0030835 negative regulation of actin filament depolymerization biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0034329 cell junction assembly biological_process
GO:0034330 cell junction organization biological_process
GO:0008015 blood circulation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0071711 basement membrane organization biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0032535 regulation of cellular component size biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0043242 negative regulation of protein-containing complex disassembly biological_process
GO:0043256 laminin complex cellular_component
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005882 intermediate filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005604 basement membrane cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030056 hemidesmosome cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030506 ankyrin binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008307 structural constituent of muscle molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075291 True 4134 lncRNA 0.39 3 7499260 7505531

Neighbor

gene id symbol gene type direction distance location
XLOC_037630 bin1a coding downstream 54507 7410798 ~ 7444753 (-)
XLOC_037629 slc23a3 coding downstream 104848 7394229 ~ 7394412 (-)
XLOC_037628 slc23a3 coding downstream 108872 7390207 ~ 7390388 (-)
XLOC_037627 slc23a3 coding downstream 120694 7371962 ~ 7378566 (-)
XLOC_037626 BX942813.1 coding downstream 139776 7357819 ~ 7359484 (-)
XLOC_037632 desma coding upstream 10333 7515864 ~ 7539326 (-)
XLOC_037633 dnajb2 coding upstream 116091 7621622 ~ 7655301 (-)
XLOC_037634 tuba8l3 coding upstream 157107 7662638 ~ 7673856 (-)
XLOC_037635 si:ch73-199e17.1 coding upstream 172605 7678136 ~ 7684002 (-)
XLOC_037636 NA coding upstream 436238 7941769 ~ 7942597 (-)
XLOC_037618 BX842683.1 non-coding downstream 781459 6717677 ~ 6717801 (-)
XLOC_037614 NA non-coding downstream 950464 6531549 ~ 6548796 (-)
XLOC_037613 FQ377643.1 non-coding downstream 1089989 6409157 ~ 6409271 (-)
XLOC_037602 NA non-coding downstream 2631821 4866100 ~ 4867439 (-)
XLOC_037637 NA non-coding upstream 654810 8160341 ~ 8163995 (-)
XLOC_037638 NA non-coding upstream 778624 8284155 ~ 8286208 (-)
XLOC_037644 BX537313.1 non-coding upstream 1503592 9009123 ~ 9024269 (-)
XLOC_037645 NA non-coding upstream 1520852 9026383 ~ 9050515 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G175003 NA non-coding CI01000037 null 1751814 ~ 1755182 (+)